Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01127

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01126 and H281DRAFT_01127 overlap by 4 nucleotidesH281DRAFT_01127 and H281DRAFT_01128 are separated by 6 nucleotidesH281DRAFT_01128 and H281DRAFT_01129 are separated by 74 nucleotides H281DRAFT_01126: H281DRAFT_01126 - Molecular chaperone DnaK (HSP70), at 1,267,704 to 1,269,563 _01126 H281DRAFT_01127: H281DRAFT_01127 - Molecular chaperone, at 1,269,560 to 1,272,529 _01127 H281DRAFT_01128: H281DRAFT_01128 - phosphonoacetaldehyde hydrolase, at 1,272,536 to 1,273,339 _01128 H281DRAFT_01129: H281DRAFT_01129 - 2-aminoethylphosphonate-pyruvate transaminase, at 1,273,414 to 1,274,664 _01129 Position (kb) 1269 1270 1271 1272 1273Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1268.571 kb on + strand, within H281DRAFT_01126at 1268.571 kb on + strand, within H281DRAFT_01126at 1268.571 kb on + strand, within H281DRAFT_01126at 1268.571 kb on + strand, within H281DRAFT_01126at 1268.571 kb on + strand, within H281DRAFT_01126at 1268.572 kb on - strand, within H281DRAFT_01126at 1268.572 kb on - strand, within H281DRAFT_01126at 1268.572 kb on - strand, within H281DRAFT_01126at 1268.799 kb on + strand, within H281DRAFT_01126at 1269.091 kb on - strand, within H281DRAFT_01126at 1269.093 kb on + strand, within H281DRAFT_01126at 1269.093 kb on + strand, within H281DRAFT_01126at 1269.093 kb on + strand, within H281DRAFT_01126at 1269.151 kb on - strand, within H281DRAFT_01126at 1269.153 kb on + strand, within H281DRAFT_01126at 1269.153 kb on + strand, within H281DRAFT_01126at 1269.154 kb on - strandat 1269.154 kb on - strand, within H281DRAFT_01126at 1269.578 kb on + strandat 1269.723 kb on - strandat 1269.895 kb on - strand, within H281DRAFT_01127at 1269.895 kb on - strand, within H281DRAFT_01127at 1270.294 kb on + strand, within H281DRAFT_01127at 1270.540 kb on + strand, within H281DRAFT_01127at 1271.082 kb on - strand, within H281DRAFT_01127at 1271.083 kb on + strand, within H281DRAFT_01127at 1271.084 kb on - strand, within H281DRAFT_01127at 1271.084 kb on - strand, within H281DRAFT_01127at 1271.200 kb on + strand, within H281DRAFT_01127at 1271.603 kb on - strand, within H281DRAFT_01127at 1272.005 kb on + strand, within H281DRAFT_01127at 1272.221 kb on + strand, within H281DRAFT_01127at 1272.222 kb on - strand, within H281DRAFT_01127at 1272.846 kb on + strand, within H281DRAFT_01128at 1272.855 kb on + strand, within H281DRAFT_01128at 1272.855 kb on + strand, within H281DRAFT_01128at 1272.855 kb on + strand, within H281DRAFT_01128at 1272.856 kb on - strand, within H281DRAFT_01128at 1272.856 kb on - strand, within H281DRAFT_01128at 1273.043 kb on - strandat 1273.043 kb on - strand, within H281DRAFT_01128at 1273.086 kb on + strand, within H281DRAFT_01128at 1273.125 kb on + strand, within H281DRAFT_01128at 1273.125 kb on + strand, within H281DRAFT_01128at 1273.125 kb on + strand, within H281DRAFT_01128at 1273.125 kb on + strand, within H281DRAFT_01128at 1273.126 kb on - strandat 1273.126 kb on - strand, within H281DRAFT_01128at 1273.126 kb on - strand, within H281DRAFT_01128at 1273.233 kb on - strand, within H281DRAFT_01128at 1273.287 kb on + strandat 1273.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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1,268,571 + H281DRAFT_01126 0.47 -1.2
1,268,571 + H281DRAFT_01126 0.47 +0.7
1,268,571 + H281DRAFT_01126 0.47 +0.3
1,268,571 + H281DRAFT_01126 0.47 -0.8
1,268,571 + H281DRAFT_01126 0.47 -1.0
1,268,572 - H281DRAFT_01126 0.47 +0.2
1,268,572 - H281DRAFT_01126 0.47 -0.3
1,268,572 - H281DRAFT_01126 0.47 -0.2
1,268,799 + H281DRAFT_01126 0.59 +0.8
1,269,091 - H281DRAFT_01126 0.75 -0.4
1,269,093 + H281DRAFT_01126 0.75 -1.3
1,269,093 + H281DRAFT_01126 0.75 +1.2
1,269,093 + H281DRAFT_01126 0.75 -1.0
1,269,151 - H281DRAFT_01126 0.78 +0.0
1,269,153 + H281DRAFT_01126 0.78 +0.3
1,269,153 + H281DRAFT_01126 0.78 -0.2
1,269,154 - -1.5
1,269,154 - H281DRAFT_01126 0.78 -2.3
1,269,578 + -0.4
1,269,723 - +0.2
1,269,895 - H281DRAFT_01127 0.11 -0.7
1,269,895 - H281DRAFT_01127 0.11 +0.2
1,270,294 + H281DRAFT_01127 0.25 +0.8
1,270,540 + H281DRAFT_01127 0.33 +1.5
1,271,082 - H281DRAFT_01127 0.51 +0.3
1,271,083 + H281DRAFT_01127 0.51 +0.0
1,271,084 - H281DRAFT_01127 0.51 +2.9
1,271,084 - H281DRAFT_01127 0.51 +0.8
1,271,200 + H281DRAFT_01127 0.55 +0.3
1,271,603 - H281DRAFT_01127 0.69 +0.5
1,272,005 + H281DRAFT_01127 0.82 +0.1
1,272,221 + H281DRAFT_01127 0.90 -0.3
1,272,222 - H281DRAFT_01127 0.90 +1.1
1,272,846 + H281DRAFT_01128 0.39 -0.1
1,272,855 + H281DRAFT_01128 0.40 +0.4
1,272,855 + H281DRAFT_01128 0.40 +0.0
1,272,855 + H281DRAFT_01128 0.40 -0.5
1,272,856 - H281DRAFT_01128 0.40 -0.5
1,272,856 - H281DRAFT_01128 0.40 +0.5
1,273,043 - -0.3
1,273,043 - H281DRAFT_01128 0.63 +0.2
1,273,086 + H281DRAFT_01128 0.68 -0.5
1,273,125 + H281DRAFT_01128 0.73 +0.9
1,273,125 + H281DRAFT_01128 0.73 +0.7
1,273,125 + H281DRAFT_01128 0.73 -1.1
1,273,125 + H281DRAFT_01128 0.73 +0.2
1,273,126 - -0.3
1,273,126 - H281DRAFT_01128 0.73 -1.5
1,273,126 - H281DRAFT_01128 0.73 -1.6
1,273,233 - H281DRAFT_01128 0.87 -0.9
1,273,287 + -1.5
1,273,513 + +1.1

Or see this region's nucleotide sequence