Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01106

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01105 and H281DRAFT_01106 are separated by 176 nucleotidesH281DRAFT_01106 and H281DRAFT_01107 are separated by 49 nucleotides H281DRAFT_01105: H281DRAFT_01105 - transcriptional regulator, AraC family, at 1,242,398 to 1,243,312 _01105 H281DRAFT_01106: H281DRAFT_01106 - Predicted ATPase, at 1,243,489 to 1,246,410 _01106 H281DRAFT_01107: H281DRAFT_01107 - hypothetical protein, at 1,246,460 to 1,248,307 _01107 Position (kb) 1243 1244 1245 1246 1247Strain fitness (log2 ratio) -1 0 1 2 3at 1242.623 kb on + strand, within H281DRAFT_01105at 1242.624 kb on - strandat 1243.091 kb on + strand, within H281DRAFT_01105at 1243.156 kb on + strand, within H281DRAFT_01105at 1243.417 kb on + strandat 1243.423 kb on - strandat 1243.440 kb on - strandat 1243.440 kb on - strandat 1243.675 kb on - strandat 1243.677 kb on + strandat 1243.678 kb on - strandat 1244.421 kb on - strand, within H281DRAFT_01106at 1244.816 kb on - strand, within H281DRAFT_01106at 1246.328 kb on + strandat 1246.585 kb on + strandat 1246.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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1,242,623 + H281DRAFT_01105 0.25 +2.1
1,242,624 - +0.4
1,243,091 + H281DRAFT_01105 0.76 -1.0
1,243,156 + H281DRAFT_01105 0.83 -0.1
1,243,417 + +3.4
1,243,423 - +1.3
1,243,440 - +1.2
1,243,440 - +2.7
1,243,675 - +0.1
1,243,677 + -0.9
1,243,678 - -0.6
1,244,421 - H281DRAFT_01106 0.32 -1.0
1,244,816 - H281DRAFT_01106 0.45 +0.9
1,246,328 + -0.6
1,246,585 + -0.8
1,246,585 + +2.7

Or see this region's nucleotide sequence