Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01092

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01091 and H281DRAFT_01092 are separated by 111 nucleotidesH281DRAFT_01092 and H281DRAFT_01093 are separated by 47 nucleotides H281DRAFT_01091: H281DRAFT_01091 - Glyoxylase, beta-lactamase superfamily II, at 1,224,126 to 1,225,037 _01091 H281DRAFT_01092: H281DRAFT_01092 - transcriptional regulator, LysR family, at 1,225,149 to 1,226,090 _01092 H281DRAFT_01093: H281DRAFT_01093 - transcriptional regulator, winged helix family, at 1,226,138 to 1,229,152 _01093 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -2 -1 0 1at 1224.474 kb on + strand, within H281DRAFT_01091at 1224.488 kb on + strand, within H281DRAFT_01091at 1224.488 kb on + strand, within H281DRAFT_01091at 1224.760 kb on - strand, within H281DRAFT_01091at 1224.816 kb on + strand, within H281DRAFT_01091at 1224.816 kb on + strand, within H281DRAFT_01091at 1225.232 kb on + strandat 1225.255 kb on - strand, within H281DRAFT_01092at 1225.538 kb on - strand, within H281DRAFT_01092at 1225.956 kb on + strand, within H281DRAFT_01092at 1226.805 kb on - strand, within H281DRAFT_01093

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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1,224,474 + H281DRAFT_01091 0.38 -1.2
1,224,488 + H281DRAFT_01091 0.40 -0.5
1,224,488 + H281DRAFT_01091 0.40 +0.0
1,224,760 - H281DRAFT_01091 0.70 +0.3
1,224,816 + H281DRAFT_01091 0.76 -2.3
1,224,816 + H281DRAFT_01091 0.76 -0.6
1,225,232 + +1.0
1,225,255 - H281DRAFT_01092 0.11 -0.6
1,225,538 - H281DRAFT_01092 0.41 -0.7
1,225,956 + H281DRAFT_01092 0.86 -1.3
1,226,805 - H281DRAFT_01093 0.22 +1.1

Or see this region's nucleotide sequence