Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01078

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01077 and H281DRAFT_01078 overlap by 4 nucleotidesH281DRAFT_01078 and H281DRAFT_01079 are separated by 26 nucleotides H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612 _01077 H281DRAFT_01078: H281DRAFT_01078 - dihydroxycyclohexadiene carboxylate dehydrogenase, at 1,210,609 to 1,211,385 _01078 H281DRAFT_01079: H281DRAFT_01079 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 1,211,412 to 1,211,810 _01079 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1209.780 kb on - strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1209.783 kb on + strand, within H281DRAFT_01077at 1210.490 kb on + strand, within H281DRAFT_01077at 1210.638 kb on - strandat 1210.804 kb on + strand, within H281DRAFT_01078at 1210.805 kb on - strand, within H281DRAFT_01078at 1211.339 kb on - strandat 1211.503 kb on + strand, within H281DRAFT_01079at 1211.504 kb on - strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.505 kb on + strand, within H281DRAFT_01079at 1211.506 kb on - strand, within H281DRAFT_01079at 1211.600 kb on - strand, within H281DRAFT_01079at 1211.701 kb on - strand, within H281DRAFT_01079at 1212.136 kb on + strandat 1212.148 kb on + strandat 1212.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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1,209,780 - H281DRAFT_01077 0.19 +0.4
1,209,783 + H281DRAFT_01077 0.19 -0.6
1,209,783 + H281DRAFT_01077 0.19 +0.9
1,210,490 + H281DRAFT_01077 0.88 +0.8
1,210,638 - -0.0
1,210,804 + H281DRAFT_01078 0.25 +0.5
1,210,805 - H281DRAFT_01078 0.25 +1.7
1,211,339 - +2.0
1,211,503 + H281DRAFT_01079 0.23 +1.4
1,211,504 - H281DRAFT_01079 0.23 +1.2
1,211,505 + H281DRAFT_01079 0.23 -2.4
1,211,505 + H281DRAFT_01079 0.23 -2.7
1,211,505 + H281DRAFT_01079 0.23 +0.7
1,211,506 - H281DRAFT_01079 0.24 +1.6
1,211,600 - H281DRAFT_01079 0.47 +0.3
1,211,701 - H281DRAFT_01079 0.72 -3.6
1,212,136 + +0.4
1,212,148 + +0.6
1,212,288 + +0.3

Or see this region's nucleotide sequence