Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00888

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00887 and H281DRAFT_00888 are separated by 70 nucleotidesH281DRAFT_00888 and H281DRAFT_00889 are separated by 217 nucleotidesH281DRAFT_00889 and H281DRAFT_00890 are separated by 78 nucleotidesH281DRAFT_00890 and H281DRAFT_00891 are separated by 300 nucleotides H281DRAFT_00887: H281DRAFT_00887 - Uncharacterized conserved protein, DUF1501 family, at 983,686 to 984,849 _00887 H281DRAFT_00888: H281DRAFT_00888 - phytoene synthase, at 984,920 to 985,756 _00888 H281DRAFT_00889: H281DRAFT_00889 - tRNA_Leu_TAG, at 985,974 to 986,060 _00889 H281DRAFT_00890: H281DRAFT_00890 - hypothetical protein, at 986,139 to 986,426 _00890 H281DRAFT_00891: H281DRAFT_00891 - hypothetical protein, at 986,727 to 986,987 _00891 Position (kb) 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 984.072 kb on - strand, within H281DRAFT_00887at 984.072 kb on - strand, within H281DRAFT_00887at 984.100 kb on + strand, within H281DRAFT_00887at 984.101 kb on - strand, within H281DRAFT_00887at 984.234 kb on - strand, within H281DRAFT_00887at 984.274 kb on + strand, within H281DRAFT_00887at 984.274 kb on + strand, within H281DRAFT_00887at 984.274 kb on + strandat 984.274 kb on + strand, within H281DRAFT_00887at 984.274 kb on + strand, within H281DRAFT_00887at 984.275 kb on - strand, within H281DRAFT_00887at 984.275 kb on - strand, within H281DRAFT_00887at 984.446 kb on + strand, within H281DRAFT_00887at 984.478 kb on + strandat 984.580 kb on + strand, within H281DRAFT_00887at 984.580 kb on + strand, within H281DRAFT_00887at 984.581 kb on - strand, within H281DRAFT_00887at 984.581 kb on - strand, within H281DRAFT_00887at 984.581 kb on - strand, within H281DRAFT_00887at 984.581 kb on - strand, within H281DRAFT_00887at 984.582 kb on + strand, within H281DRAFT_00887at 985.222 kb on - strand, within H281DRAFT_00888at 985.222 kb on - strand, within H281DRAFT_00888at 985.222 kb on - strand, within H281DRAFT_00888at 985.392 kb on + strand, within H281DRAFT_00888at 985.392 kb on + strand, within H281DRAFT_00888at 985.393 kb on - strand, within H281DRAFT_00888at 985.740 kb on + strandat 985.835 kb on + strandat 986.069 kb on + strandat 986.493 kb on + strandat 986.494 kb on - strandat 986.495 kb on + strandat 986.537 kb on - strandat 986.565 kb on + strandat 986.595 kb on + strandat 986.599 kb on + strandat 986.599 kb on + strandat 986.599 kb on + strandat 986.599 kb on + strandat 986.610 kb on - strandat 986.610 kb on - strandat 986.708 kb on + strandat 986.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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984,072 - H281DRAFT_00887 0.33 +2.0
984,072 - H281DRAFT_00887 0.33 +1.0
984,100 + H281DRAFT_00887 0.36 -0.2
984,101 - H281DRAFT_00887 0.36 +1.5
984,234 - H281DRAFT_00887 0.47 +0.2
984,274 + H281DRAFT_00887 0.51 -1.8
984,274 + H281DRAFT_00887 0.51 -2.0
984,274 + -0.6
984,274 + H281DRAFT_00887 0.51 -0.1
984,274 + H281DRAFT_00887 0.51 -0.5
984,275 - H281DRAFT_00887 0.51 -0.2
984,275 - H281DRAFT_00887 0.51 +0.2
984,446 + H281DRAFT_00887 0.65 +0.3
984,478 + -0.0
984,580 + H281DRAFT_00887 0.77 +1.0
984,580 + H281DRAFT_00887 0.77 -0.5
984,581 - H281DRAFT_00887 0.77 +1.2
984,581 - H281DRAFT_00887 0.77 +0.2
984,581 - H281DRAFT_00887 0.77 +0.8
984,581 - H281DRAFT_00887 0.77 -0.7
984,582 + H281DRAFT_00887 0.77 -1.9
985,222 - H281DRAFT_00888 0.36 -0.6
985,222 - H281DRAFT_00888 0.36 -0.6
985,222 - H281DRAFT_00888 0.36 -0.0
985,392 + H281DRAFT_00888 0.56 -2.0
985,392 + H281DRAFT_00888 0.56 -2.8
985,393 - H281DRAFT_00888 0.57 -2.1
985,740 + +0.7
985,835 + -0.1
986,069 + +0.4
986,493 + -0.0
986,494 - -0.5
986,495 + -1.4
986,537 - +0.3
986,565 + +1.0
986,595 + -0.2
986,599 + +1.3
986,599 + +0.3
986,599 + +0.8
986,599 + -1.9
986,610 - +0.8
986,610 - -0.5
986,708 + -0.2
986,714 + -0.2

Or see this region's nucleotide sequence