Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00445

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00444 and H281DRAFT_00445 are separated by 23 nucleotidesH281DRAFT_00445 and H281DRAFT_00446 are separated by 269 nucleotides H281DRAFT_00444: H281DRAFT_00444 - N-acetylglutamate synthase, at 487,531 to 488,919 _00444 H281DRAFT_00445: H281DRAFT_00445 - ATP-dependent helicase HrpA, at 488,943 to 493,397 _00445 H281DRAFT_00446: H281DRAFT_00446 - Autotransporter adhesin, at 493,667 to 496,537 _00446 Position (kb) 488 489 490 491 492 493 494Strain fitness (log2 ratio) -2 -1 0 1at 488.112 kb on - strand, within H281DRAFT_00444at 488.112 kb on - strand, within H281DRAFT_00444at 488.112 kb on - strandat 488.112 kb on - strand, within H281DRAFT_00444at 488.930 kb on - strandat 488.930 kb on - strandat 488.930 kb on - strandat 488.930 kb on - strandat 488.931 kb on + strandat 489.479 kb on - strand, within H281DRAFT_00445at 489.777 kb on + strand, within H281DRAFT_00445at 489.777 kb on + strand, within H281DRAFT_00445at 490.389 kb on + strand, within H281DRAFT_00445at 490.389 kb on + strand, within H281DRAFT_00445at 490.425 kb on + strand, within H281DRAFT_00445at 490.540 kb on - strand, within H281DRAFT_00445at 490.540 kb on - strand, within H281DRAFT_00445at 491.224 kb on - strand, within H281DRAFT_00445at 491.251 kb on - strand, within H281DRAFT_00445at 491.482 kb on - strand, within H281DRAFT_00445at 491.482 kb on - strand, within H281DRAFT_00445at 491.688 kb on + strand, within H281DRAFT_00445at 491.689 kb on - strand, within H281DRAFT_00445at 491.715 kb on + strand, within H281DRAFT_00445at 491.796 kb on + strand, within H281DRAFT_00445at 491.797 kb on - strand, within H281DRAFT_00445at 491.898 kb on + strand, within H281DRAFT_00445at 491.899 kb on - strand, within H281DRAFT_00445at 491.899 kb on - strand, within H281DRAFT_00445at 491.952 kb on + strand, within H281DRAFT_00445at 492.296 kb on - strand, within H281DRAFT_00445at 492.518 kb on + strand, within H281DRAFT_00445at 492.519 kb on - strand, within H281DRAFT_00445at 492.550 kb on - strand, within H281DRAFT_00445at 492.622 kb on + strandat 492.623 kb on - strand, within H281DRAFT_00445at 492.760 kb on - strand, within H281DRAFT_00445at 493.003 kb on + strandat 493.230 kb on + strandat 493.230 kb on + strandat 493.230 kb on + strandat 493.231 kb on - strandat 493.231 kb on - strandat 493.369 kb on - strandat 493.369 kb on - strandat 493.369 kb on - strandat 493.412 kb on + strandat 493.669 kb on - strandat 493.679 kb on - strandat 493.738 kb on - strandat 493.868 kb on + strandat 493.868 kb on + strandat 493.929 kb on + strandat 493.929 kb on + strandat 493.930 kb on - strandat 494.269 kb on + strand, within H281DRAFT_00446

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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488,112 - H281DRAFT_00444 0.42 -2.4
488,112 - H281DRAFT_00444 0.42 -1.1
488,112 - -1.0
488,112 - H281DRAFT_00444 0.42 -0.1
488,930 - -0.5
488,930 - +1.4
488,930 - +0.8
488,930 - -0.2
488,931 + -0.2
489,479 - H281DRAFT_00445 0.12 -0.4
489,777 + H281DRAFT_00445 0.19 +0.2
489,777 + H281DRAFT_00445 0.19 -0.7
490,389 + H281DRAFT_00445 0.32 +0.9
490,389 + H281DRAFT_00445 0.32 -0.0
490,425 + H281DRAFT_00445 0.33 -2.4
490,540 - H281DRAFT_00445 0.36 +1.5
490,540 - H281DRAFT_00445 0.36 -0.6
491,224 - H281DRAFT_00445 0.51 -2.0
491,251 - H281DRAFT_00445 0.52 -1.2
491,482 - H281DRAFT_00445 0.57 -1.3
491,482 - H281DRAFT_00445 0.57 -1.3
491,688 + H281DRAFT_00445 0.62 -1.4
491,689 - H281DRAFT_00445 0.62 -1.2
491,715 + H281DRAFT_00445 0.62 -1.3
491,796 + H281DRAFT_00445 0.64 +0.4
491,797 - H281DRAFT_00445 0.64 -0.5
491,898 + H281DRAFT_00445 0.66 +0.6
491,899 - H281DRAFT_00445 0.66 +0.3
491,899 - H281DRAFT_00445 0.66 -1.3
491,952 + H281DRAFT_00445 0.68 -1.8
492,296 - H281DRAFT_00445 0.75 -2.0
492,518 + H281DRAFT_00445 0.80 +0.7
492,519 - H281DRAFT_00445 0.80 +0.5
492,550 - H281DRAFT_00445 0.81 +0.6
492,622 + +1.0
492,623 - H281DRAFT_00445 0.83 -0.4
492,760 - H281DRAFT_00445 0.86 -0.5
493,003 + +0.7
493,230 + -2.2
493,230 + +0.9
493,230 + -0.0
493,231 - +0.1
493,231 - +1.2
493,369 - -0.3
493,369 - -0.1
493,369 - -0.1
493,412 + -0.9
493,669 - -1.9
493,679 - +0.0
493,738 - +0.8
493,868 + +0.0
493,868 + -2.1
493,929 + +1.4
493,929 + -1.6
493,930 - +0.8
494,269 + H281DRAFT_00446 0.21 +1.4

Or see this region's nucleotide sequence