Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00297

Experiment: Bu1_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00296 and H281DRAFT_00297 are separated by 180 nucleotidesH281DRAFT_00297 and H281DRAFT_00298 are separated by 195 nucleotidesH281DRAFT_00298 and H281DRAFT_00299 are separated by 264 nucleotides H281DRAFT_00296: H281DRAFT_00296 - poly(3-hydroxybutyrate) depolymerase, at 315,763 to 317,040 _00296 H281DRAFT_00297: H281DRAFT_00297 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 317,221 to 319,143 _00297 H281DRAFT_00298: H281DRAFT_00298 - hypothetical protein, at 319,339 to 319,584 _00298 H281DRAFT_00299: H281DRAFT_00299 - Protein of unknown function (DUF3096), at 319,849 to 320,001 _00299 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.301 kb on + strand, within H281DRAFT_00296at 316.346 kb on + strand, within H281DRAFT_00296at 316.389 kb on + strand, within H281DRAFT_00296at 316.559 kb on + strand, within H281DRAFT_00296at 316.625 kb on + strand, within H281DRAFT_00296at 316.626 kb on - strand, within H281DRAFT_00296at 316.934 kb on + strandat 316.934 kb on + strandat 317.007 kb on + strandat 317.007 kb on + strandat 317.034 kb on - strandat 317.126 kb on - strandat 317.154 kb on + strandat 317.157 kb on - strandat 317.157 kb on - strandat 317.228 kb on - strandat 317.295 kb on + strandat 317.477 kb on + strand, within H281DRAFT_00297at 317.478 kb on - strand, within H281DRAFT_00297at 317.478 kb on - strand, within H281DRAFT_00297at 317.650 kb on - strand, within H281DRAFT_00297at 317.656 kb on + strand, within H281DRAFT_00297at 317.656 kb on + strand, within H281DRAFT_00297at 317.656 kb on + strand, within H281DRAFT_00297at 317.657 kb on - strand, within H281DRAFT_00297at 317.733 kb on - strand, within H281DRAFT_00297at 317.733 kb on - strand, within H281DRAFT_00297at 318.062 kb on + strand, within H281DRAFT_00297at 318.182 kb on + strand, within H281DRAFT_00297at 318.182 kb on + strand, within H281DRAFT_00297at 318.182 kb on + strand, within H281DRAFT_00297at 318.182 kb on + strand, within H281DRAFT_00297at 318.182 kb on + strand, within H281DRAFT_00297at 318.183 kb on - strand, within H281DRAFT_00297at 318.183 kb on - strand, within H281DRAFT_00297at 318.289 kb on - strand, within H281DRAFT_00297at 318.320 kb on + strand, within H281DRAFT_00297at 318.881 kb on - strand, within H281DRAFT_00297at 319.079 kb on + strandat 319.111 kb on + strandat 319.111 kb on + strandat 319.111 kb on + strandat 319.240 kb on - strandat 319.240 kb on - strandat 319.245 kb on + strandat 319.245 kb on + strandat 319.245 kb on + strandat 319.246 kb on - strandat 319.246 kb on - strandat 319.255 kb on - strandat 319.522 kb on + strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.657 kb on + strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.816 kb on + strandat 319.905 kb on - strand, within H281DRAFT_00299at 319.917 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.951 kb on + strand, within H281DRAFT_00299at 319.952 kb on - strand, within H281DRAFT_00299at 320.005 kb on + strandat 320.006 kb on - strandat 320.012 kb on + strandat 320.024 kb on - strandat 320.114 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
remove
316,301 + H281DRAFT_00296 0.42 -1.7
316,346 + H281DRAFT_00296 0.46 +1.4
316,389 + H281DRAFT_00296 0.49 -2.8
316,559 + H281DRAFT_00296 0.62 +0.6
316,625 + H281DRAFT_00296 0.67 -0.6
316,626 - H281DRAFT_00296 0.68 -2.1
316,934 + +0.3
316,934 + +1.0
317,007 + +0.2
317,007 + +0.3
317,034 - +0.8
317,126 - +0.7
317,154 + +0.2
317,157 - +0.5
317,157 - -1.3
317,228 - +0.1
317,295 + -0.2
317,477 + H281DRAFT_00297 0.13 +1.0
317,478 - H281DRAFT_00297 0.13 +1.9
317,478 - H281DRAFT_00297 0.13 +0.2
317,650 - H281DRAFT_00297 0.22 +0.2
317,656 + H281DRAFT_00297 0.23 -1.7
317,656 + H281DRAFT_00297 0.23 +0.4
317,656 + H281DRAFT_00297 0.23 +0.6
317,657 - H281DRAFT_00297 0.23 -0.1
317,733 - H281DRAFT_00297 0.27 -0.8
317,733 - H281DRAFT_00297 0.27 -2.7
318,062 + H281DRAFT_00297 0.44 +1.2
318,182 + H281DRAFT_00297 0.50 -1.3
318,182 + H281DRAFT_00297 0.50 -0.6
318,182 + H281DRAFT_00297 0.50 +0.6
318,182 + H281DRAFT_00297 0.50 -0.5
318,182 + H281DRAFT_00297 0.50 -0.0
318,183 - H281DRAFT_00297 0.50 +0.5
318,183 - H281DRAFT_00297 0.50 +0.3
318,289 - H281DRAFT_00297 0.56 -1.1
318,320 + H281DRAFT_00297 0.57 +0.6
318,881 - H281DRAFT_00297 0.86 +0.7
319,079 + +0.8
319,111 + +0.5
319,111 + -0.6
319,111 + +0.8
319,240 - -0.3
319,240 - +0.2
319,245 + +0.2
319,245 + -1.3
319,245 + +2.0
319,246 - -0.2
319,246 - -0.4
319,255 - -0.7
319,522 + H281DRAFT_00298 0.74 -0.8
319,523 - H281DRAFT_00298 0.75 -0.7
319,523 - H281DRAFT_00298 0.75 -0.3
319,657 + -1.4
319,658 - -0.4
319,658 - -0.4
319,658 - -1.4
319,816 + +1.0
319,905 - H281DRAFT_00299 0.37 -2.9
319,917 + H281DRAFT_00299 0.44 -1.1
319,919 + H281DRAFT_00299 0.46 +0.3
319,919 + H281DRAFT_00299 0.46 -0.0
319,919 + H281DRAFT_00299 0.46 -2.1
319,919 + H281DRAFT_00299 0.46 -0.1
319,920 - H281DRAFT_00299 0.46 +1.6
319,920 - H281DRAFT_00299 0.46 -0.9
319,920 - H281DRAFT_00299 0.46 -0.1
319,920 - H281DRAFT_00299 0.46 -1.3
319,920 - H281DRAFT_00299 0.46 +0.6
319,920 - H281DRAFT_00299 0.46 -2.7
319,951 + H281DRAFT_00299 0.67 -0.4
319,952 - H281DRAFT_00299 0.67 +0.6
320,005 + -0.9
320,006 - +0.2
320,012 + +0.3
320,024 - -0.6
320,114 - +0.3

Or see this region's nucleotide sequence