Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00221

Experiment: Bu1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00220 and H281DRAFT_00221 are separated by 617 nucleotidesH281DRAFT_00221 and H281DRAFT_00222 are separated by 42 nucleotidesH281DRAFT_00222 and H281DRAFT_00223 overlap by 4 nucleotides H281DRAFT_00220: H281DRAFT_00220 - Outer membrane protein (porin), at 239,354 to 240,475 _00220 H281DRAFT_00221: H281DRAFT_00221 - amino acid ABC transporter ATP-binding protein, PAAT family, at 241,093 to 241,872 _00221 H281DRAFT_00222: H281DRAFT_00222 - amino acid ABC transporter membrane protein 2, PAAT family, at 241,915 to 242,628 _00222 H281DRAFT_00223: H281DRAFT_00223 - amino acid ABC transporter membrane protein 1, PAAT family, at 242,625 to 243,314 _00223 Position (kb) 241 242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 240.136 kb on + strand, within H281DRAFT_00220at 240.136 kb on + strand, within H281DRAFT_00220at 240.136 kb on + strand, within H281DRAFT_00220at 240.137 kb on - strand, within H281DRAFT_00220at 240.145 kb on + strand, within H281DRAFT_00220at 240.369 kb on - strandat 240.369 kb on - strandat 240.373 kb on - strandat 240.399 kb on + strandat 240.399 kb on + strandat 240.399 kb on + strandat 240.400 kb on - strandat 240.512 kb on + strandat 240.581 kb on + strandat 240.581 kb on + strandat 240.711 kb on - strandat 240.724 kb on + strandat 240.886 kb on + strandat 240.912 kb on - strandat 240.912 kb on - strandat 240.942 kb on - strandat 241.007 kb on + strandat 241.086 kb on - strandat 241.086 kb on - strandat 241.893 kb on - strandat 242.000 kb on + strand, within H281DRAFT_00222at 242.001 kb on - strand, within H281DRAFT_00222at 242.040 kb on - strand, within H281DRAFT_00222at 242.142 kb on - strand, within H281DRAFT_00222at 242.144 kb on + strand, within H281DRAFT_00222at 242.145 kb on - strand, within H281DRAFT_00222at 242.190 kb on - strand, within H281DRAFT_00222at 242.213 kb on + strand, within H281DRAFT_00222at 242.280 kb on + strand, within H281DRAFT_00222at 242.325 kb on + strand, within H281DRAFT_00222at 242.326 kb on - strand, within H281DRAFT_00222at 242.381 kb on + strand, within H281DRAFT_00222at 242.404 kb on + strand, within H281DRAFT_00222at 242.404 kb on + strand, within H281DRAFT_00222at 242.438 kb on + strand, within H281DRAFT_00222at 242.445 kb on - strand, within H281DRAFT_00222at 242.588 kb on + strandat 242.589 kb on - strandat 242.629 kb on - strandat 242.671 kb on + strandat 242.843 kb on + strand, within H281DRAFT_00223

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_10
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240,136 + H281DRAFT_00220 0.70 +1.0
240,136 + H281DRAFT_00220 0.70 -0.4
240,136 + H281DRAFT_00220 0.70 +0.8
240,137 - H281DRAFT_00220 0.70 +0.7
240,145 + H281DRAFT_00220 0.70 +3.4
240,369 - -0.3
240,369 - -0.8
240,373 - +0.4
240,399 + +0.4
240,399 + +0.9
240,399 + -1.0
240,400 - -1.3
240,512 + +1.1
240,581 + -0.6
240,581 + -1.1
240,711 - -1.1
240,724 + +0.9
240,886 + +0.6
240,912 - -0.8
240,912 - +1.2
240,942 - +1.0
241,007 + +1.1
241,086 - +1.0
241,086 - +0.0
241,893 - -1.8
242,000 + H281DRAFT_00222 0.12 -0.1
242,001 - H281DRAFT_00222 0.12 +1.4
242,040 - H281DRAFT_00222 0.18 +0.2
242,142 - H281DRAFT_00222 0.32 +1.2
242,144 + H281DRAFT_00222 0.32 -0.8
242,145 - H281DRAFT_00222 0.32 +0.5
242,190 - H281DRAFT_00222 0.39 +0.8
242,213 + H281DRAFT_00222 0.42 +0.9
242,280 + H281DRAFT_00222 0.51 +2.4
242,325 + H281DRAFT_00222 0.57 +0.7
242,326 - H281DRAFT_00222 0.58 -0.8
242,381 + H281DRAFT_00222 0.65 -1.4
242,404 + H281DRAFT_00222 0.68 +1.4
242,404 + H281DRAFT_00222 0.68 -0.5
242,438 + H281DRAFT_00222 0.73 -2.2
242,445 - H281DRAFT_00222 0.74 -0.8
242,588 + -0.8
242,589 - +1.3
242,629 - +1.6
242,671 + -0.4
242,843 + H281DRAFT_00223 0.32 +0.7

Or see this region's nucleotide sequence