Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06800

Experiment: marine broth 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06790 and PGA1_c06800 overlap by 1 nucleotidesPGA1_c06800 and PGA1_c06810 overlap by 1 nucleotidesPGA1_c06810 and PGA1_c06820 overlap by 4 nucleotides PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138 _c06790 PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052 _c06800 PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032 _c06810 PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994 _c06820 Position (kb) 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 699.158 kb on + strandat 699.158 kb on + strandat 699.158 kb on + strandat 699.180 kb on + strandat 699.185 kb on + strandat 699.185 kb on + strandat 699.265 kb on - strand, within PGA1_c06790at 699.277 kb on + strand, within PGA1_c06790at 699.287 kb on + strand, within PGA1_c06790at 699.305 kb on - strand, within PGA1_c06790at 699.334 kb on - strand, within PGA1_c06790at 699.349 kb on - strand, within PGA1_c06790at 699.384 kb on - strand, within PGA1_c06790at 699.429 kb on - strand, within PGA1_c06790at 699.429 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.447 kb on + strand, within PGA1_c06790at 699.471 kb on - strand, within PGA1_c06790at 699.508 kb on + strand, within PGA1_c06790at 699.516 kb on - strand, within PGA1_c06790at 699.521 kb on - strand, within PGA1_c06790at 699.578 kb on + strand, within PGA1_c06790at 699.636 kb on + strand, within PGA1_c06790at 699.669 kb on + strand, within PGA1_c06790at 699.678 kb on - strand, within PGA1_c06790at 699.708 kb on + strand, within PGA1_c06790at 699.732 kb on + strand, within PGA1_c06790at 699.738 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.746 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.822 kb on - strand, within PGA1_c06790at 699.874 kb on + strand, within PGA1_c06790at 699.874 kb on + strand, within PGA1_c06790at 699.877 kb on - strand, within PGA1_c06790at 699.879 kb on + strand, within PGA1_c06790at 699.882 kb on + strand, within PGA1_c06790at 699.882 kb on - strand, within PGA1_c06790at 699.882 kb on - strand, within PGA1_c06790at 699.887 kb on - strand, within PGA1_c06790at 699.908 kb on - strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.980 kb on - strand, within PGA1_c06790at 699.982 kb on + strand, within PGA1_c06790at 700.007 kb on + strand, within PGA1_c06790at 700.108 kb on + strandat 700.117 kb on + strandat 700.123 kb on + strandat 700.123 kb on + strandat 700.136 kb on - strandat 700.163 kb on - strandat 700.171 kb on - strandat 700.222 kb on + strandat 700.226 kb on - strandat 700.227 kb on + strandat 700.286 kb on + strand, within PGA1_c06800at 700.286 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.300 kb on - strand, within PGA1_c06800at 700.367 kb on + strand, within PGA1_c06800at 700.367 kb on - strand, within PGA1_c06800at 700.425 kb on + strand, within PGA1_c06800at 700.458 kb on + strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.474 kb on - strand, within PGA1_c06800at 700.540 kb on + strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.595 kb on + strand, within PGA1_c06800at 700.595 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.686 kb on + strand, within PGA1_c06800at 700.743 kb on + strand, within PGA1_c06800at 700.784 kb on + strand, within PGA1_c06800at 700.785 kb on + strand, within PGA1_c06800at 700.795 kb on - strand, within PGA1_c06800at 700.827 kb on - strand, within PGA1_c06800at 700.860 kb on - strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.935 kb on + strand, within PGA1_c06800at 700.945 kb on - strand, within PGA1_c06800at 700.955 kb on - strand, within PGA1_c06800at 700.977 kb on - strandat 700.977 kb on - strandat 700.980 kb on + strandat 700.985 kb on + strandat 700.987 kb on - strandat 700.993 kb on - strandat 700.993 kb on - strandat 701.008 kb on - strandat 701.010 kb on + strandat 701.062 kb on - strandat 701.122 kb on - strandat 701.122 kb on - strandat 701.132 kb on + strandat 701.190 kb on + strand, within PGA1_c06810at 701.193 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.367 kb on - strand, within PGA1_c06810at 701.413 kb on + strand, within PGA1_c06810at 701.423 kb on + strand, within PGA1_c06810at 701.428 kb on + strand, within PGA1_c06810at 701.431 kb on - strand, within PGA1_c06810at 701.436 kb on - strand, within PGA1_c06810at 701.437 kb on - strand, within PGA1_c06810at 701.438 kb on - strand, within PGA1_c06810at 701.484 kb on + strand, within PGA1_c06810at 701.532 kb on + strand, within PGA1_c06810at 701.558 kb on - strand, within PGA1_c06810at 701.592 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.657 kb on - strand, within PGA1_c06810at 701.668 kb on + strand, within PGA1_c06810at 701.676 kb on - strand, within PGA1_c06810at 701.689 kb on + strand, within PGA1_c06810at 701.696 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.769 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.806 kb on - strand, within PGA1_c06810at 701.821 kb on + strand, within PGA1_c06810

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 25C
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699,158 + +0.2
699,158 + -0.5
699,158 + +1.3
699,180 + +0.3
699,185 + +1.1
699,185 + +1.2
699,265 - PGA1_c06790 0.11 +0.9
699,277 + PGA1_c06790 0.12 -0.3
699,287 + PGA1_c06790 0.13 -0.1
699,305 - PGA1_c06790 0.15 +0.2
699,334 - PGA1_c06790 0.18 -1.9
699,349 - PGA1_c06790 0.19 -1.8
699,384 - PGA1_c06790 0.23 -0.0
699,429 - PGA1_c06790 0.28 +0.6
699,429 - PGA1_c06790 0.28 +0.2
699,431 - PGA1_c06790 0.28 -0.4
699,431 - PGA1_c06790 0.28 +0.9
699,431 - PGA1_c06790 0.28 -2.4
699,447 + PGA1_c06790 0.29 -0.4
699,471 - PGA1_c06790 0.32 -1.5
699,508 + PGA1_c06790 0.36 +0.5
699,516 - PGA1_c06790 0.36 -0.2
699,521 - PGA1_c06790 0.37 -0.9
699,578 + PGA1_c06790 0.43 +0.4
699,636 + PGA1_c06790 0.49 -0.7
699,669 + PGA1_c06790 0.52 -0.1
699,678 - PGA1_c06790 0.53 +0.7
699,708 + PGA1_c06790 0.56 +0.3
699,732 + PGA1_c06790 0.59 -0.1
699,738 + PGA1_c06790 0.59 +0.4
699,744 + PGA1_c06790 0.60 -0.6
699,744 + PGA1_c06790 0.60 -0.9
699,744 + PGA1_c06790 0.60 +0.8
699,744 + PGA1_c06790 0.60 +0.6
699,746 - PGA1_c06790 0.60 +0.5
699,752 - PGA1_c06790 0.61 -2.6
699,752 - PGA1_c06790 0.61 +0.6
699,752 - PGA1_c06790 0.61 -0.5
699,822 - PGA1_c06790 0.68 -0.7
699,874 + PGA1_c06790 0.73 +2.5
699,874 + PGA1_c06790 0.73 +0.6
699,877 - PGA1_c06790 0.73 +0.1
699,879 + PGA1_c06790 0.73 -1.1
699,882 + PGA1_c06790 0.74 -1.1
699,882 - PGA1_c06790 0.74 +0.0
699,882 - PGA1_c06790 0.74 +0.8
699,887 - PGA1_c06790 0.74 +0.6
699,908 - PGA1_c06790 0.76 -0.7
699,972 + PGA1_c06790 0.83 +0.1
699,972 + PGA1_c06790 0.83 -0.9
699,972 + PGA1_c06790 0.83 +0.9
699,972 + PGA1_c06790 0.83 -0.8
699,980 - PGA1_c06790 0.84 -0.2
699,982 + PGA1_c06790 0.84 +0.9
700,007 + PGA1_c06790 0.87 -0.2
700,108 + -1.9
700,117 + -0.2
700,123 + +0.7
700,123 + +0.4
700,136 - +1.4
700,163 - -1.3
700,171 - +0.6
700,222 + +0.6
700,226 - -1.1
700,227 + +0.6
700,286 + PGA1_c06800 0.16 -1.3
700,286 + PGA1_c06800 0.16 +0.1
700,292 + PGA1_c06800 0.17 +0.2
700,292 + PGA1_c06800 0.17 +0.3
700,292 + PGA1_c06800 0.17 -0.9
700,292 + PGA1_c06800 0.17 -0.4
700,292 + PGA1_c06800 0.17 -2.7
700,292 + PGA1_c06800 0.17 -2.4
700,300 - PGA1_c06800 0.18 +0.7
700,367 + PGA1_c06800 0.25 +0.2
700,367 - PGA1_c06800 0.25 +1.2
700,425 + PGA1_c06800 0.31 -0.9
700,458 + PGA1_c06800 0.35 -2.7
700,467 - PGA1_c06800 0.36 -0.2
700,467 - PGA1_c06800 0.36 +1.3
700,474 - PGA1_c06800 0.37 +2.2
700,540 + PGA1_c06800 0.44 +0.0
700,561 - PGA1_c06800 0.46 -1.1
700,561 - PGA1_c06800 0.46 -1.9
700,595 + PGA1_c06800 0.50 -1.6
700,595 - PGA1_c06800 0.50 -1.8
700,603 - PGA1_c06800 0.51 -0.5
700,603 - PGA1_c06800 0.51 -2.4
700,686 + PGA1_c06800 0.60 -0.0
700,743 + PGA1_c06800 0.66 +0.4
700,784 + PGA1_c06800 0.71 -0.5
700,785 + PGA1_c06800 0.71 -0.1
700,795 - PGA1_c06800 0.72 -0.5
700,827 - PGA1_c06800 0.75 +0.2
700,860 - PGA1_c06800 0.79 +0.1
700,921 + PGA1_c06800 0.86 +0.4
700,921 + PGA1_c06800 0.86 -1.8
700,921 + PGA1_c06800 0.86 -1.3
700,935 + PGA1_c06800 0.87 -0.9
700,945 - PGA1_c06800 0.88 -2.2
700,955 - PGA1_c06800 0.89 -1.6
700,977 - -2.9
700,977 - -0.6
700,980 + -1.0
700,985 + +1.1
700,987 - -0.1
700,993 - -2.3
700,993 - -0.9
701,008 - +0.5
701,010 + +0.6
701,062 - +0.3
701,122 - -1.8
701,122 - -0.1
701,132 + +2.2
701,190 + PGA1_c06810 0.14 +0.3
701,193 - PGA1_c06810 0.14 -1.6
701,203 - PGA1_c06810 0.15 +0.3
701,203 - PGA1_c06810 0.15 +0.8
701,367 - PGA1_c06810 0.32 +1.5
701,413 + PGA1_c06810 0.37 -0.6
701,423 + PGA1_c06810 0.38 -0.5
701,428 + PGA1_c06810 0.38 +0.3
701,431 - PGA1_c06810 0.39 +2.6
701,436 - PGA1_c06810 0.39 -0.7
701,437 - PGA1_c06810 0.39 +0.4
701,438 - PGA1_c06810 0.39 -0.3
701,484 + PGA1_c06810 0.44 -1.7
701,532 + PGA1_c06810 0.49 +0.6
701,558 - PGA1_c06810 0.52 -0.7
701,592 - PGA1_c06810 0.55 -0.4
701,602 - PGA1_c06810 0.56 -1.2
701,602 - PGA1_c06810 0.56 +0.1
701,602 - PGA1_c06810 0.56 +1.1
701,650 - PGA1_c06810 0.61 -1.1
701,650 - PGA1_c06810 0.61 +1.6
701,657 - PGA1_c06810 0.62 +1.3
701,668 + PGA1_c06810 0.63 +1.7
701,676 - PGA1_c06810 0.64 -0.5
701,689 + PGA1_c06810 0.65 +0.6
701,696 - PGA1_c06810 0.66 -0.4
701,697 - PGA1_c06810 0.66 -1.0
701,697 - PGA1_c06810 0.66 -1.5
701,738 - PGA1_c06810 0.70 +0.3
701,738 - PGA1_c06810 0.70 -0.6
701,769 + PGA1_c06810 0.73 -0.1
701,798 + PGA1_c06810 0.76 +0.2
701,798 + PGA1_c06810 0.76 +0.8
701,806 - PGA1_c06810 0.77 +0.1
701,821 + PGA1_c06810 0.78 +0.2

Or see this region's nucleotide sequence