Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00750 and PGA1_262p00760 are separated by 84 nucleotides PGA1_262p00760 and PGA1_262p00770 are separated by 69 nucleotides
PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453
_262p00750
PGA1_262p00760: PGA1_262p00760 - transcriptional regulator, AsnC family, at 85,538 to 86,011
_262p00760
PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325
_262p00770
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.569 kb on - strand, within PGA1_262p00750 at 84.629 kb on - strand, within PGA1_262p00750 at 84.738 kb on - strand, within PGA1_262p00750 at 84.813 kb on + strand, within PGA1_262p00750 at 84.915 kb on - strand, within PGA1_262p00750 at 85.055 kb on - strand, within PGA1_262p00750 at 85.273 kb on + strand, within PGA1_262p00750 at 85.390 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.400 kb on - strand at 85.620 kb on - strand, within PGA1_262p00760 at 85.620 kb on - strand, within PGA1_262p00760 at 85.718 kb on + strand, within PGA1_262p00760 at 85.725 kb on - strand, within PGA1_262p00760 at 85.831 kb on - strand, within PGA1_262p00760 at 85.833 kb on + strand, within PGA1_262p00760 at 85.883 kb on + strand, within PGA1_262p00760 at 85.953 kb on + strand, within PGA1_262p00760 at 86.066 kb on + strand at 86.512 kb on + strand, within PGA1_262p00770 at 86.556 kb on + strand, within PGA1_262p00770 at 86.635 kb on + strand, within PGA1_262p00770 at 86.906 kb on - strand, within PGA1_262p00770 at 86.928 kb on - strand, within PGA1_262p00770
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 84,569 - PGA1_262p00750 0.14 +0.1 84,629 - PGA1_262p00750 0.20 +0.4 84,738 - PGA1_262p00750 0.30 +0.0 84,813 + PGA1_262p00750 0.38 +0.4 84,915 - PGA1_262p00750 0.47 +0.1 85,055 - PGA1_262p00750 0.61 -0.4 85,273 + PGA1_262p00750 0.82 +0.4 85,390 + +0.8 85,392 + +0.4 85,392 + +2.1 85,392 + +0.8 85,392 + -0.6 85,400 - +0.3 85,620 - PGA1_262p00760 0.17 +0.4 85,620 - PGA1_262p00760 0.17 +0.4 85,718 + PGA1_262p00760 0.38 +0.1 85,725 - PGA1_262p00760 0.39 -2.3 85,831 - PGA1_262p00760 0.62 -0.7 85,833 + PGA1_262p00760 0.62 -3.2 85,883 + PGA1_262p00760 0.73 +0.5 85,953 + PGA1_262p00760 0.88 -1.6 86,066 + +1.0 86,512 + PGA1_262p00770 0.35 +0.0 86,556 + PGA1_262p00770 0.38 +0.5 86,635 + PGA1_262p00770 0.44 -0.9 86,906 - PGA1_262p00770 0.66 +1.5 86,928 - PGA1_262p00770 0.68 +0.7
Or see this region's nucleotide sequence