Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02950 and PGA1_c02960 overlap by 4 nucleotides PGA1_c02960 and PGA1_c02970 overlap by 4 nucleotides PGA1_c02970 and PGA1_c02980 are separated by 64 nucleotides
PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221
_c02950
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
PGA1_c02970: PGA1_c02970 - hypothetical protein, at 286,123 to 286,650
_c02970
PGA1_c02980: PGA1_c02980 - glutamate-cysteine ligase, at 286,715 to 288,085
_c02980
Position (kb) 286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.124 kb on - strand, within PGA1_c02950 at 285.130 kb on - strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.171 kb on + strand at 285.331 kb on - strand, within PGA1_c02960 at 285.341 kb on - strand, within PGA1_c02960 at 285.392 kb on + strand, within PGA1_c02960 at 285.433 kb on + strand, within PGA1_c02960 at 285.503 kb on - strand, within PGA1_c02960 at 285.541 kb on + strand, within PGA1_c02960 at 285.554 kb on - strand, within PGA1_c02960 at 285.561 kb on + strand, within PGA1_c02960 at 285.647 kb on - strand, within PGA1_c02960 at 285.696 kb on + strand, within PGA1_c02960 at 285.810 kb on - strand, within PGA1_c02960 at 285.895 kb on + strand, within PGA1_c02960 at 285.903 kb on - strand, within PGA1_c02960 at 285.947 kb on + strand, within PGA1_c02960 at 285.950 kb on - strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.963 kb on - strand, within PGA1_c02960 at 285.978 kb on + strand, within PGA1_c02960 at 285.986 kb on - strand, within PGA1_c02960 at 285.992 kb on + strand, within PGA1_c02960 at 286.013 kb on + strand, within PGA1_c02960 at 286.104 kb on + strand at 286.108 kb on + strand at 286.108 kb on + strand at 286.110 kb on - strand at 286.111 kb on - strand at 286.153 kb on + strand at 286.161 kb on - strand at 286.161 kb on - strand at 286.186 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.401 kb on - strand, within PGA1_c02970 at 286.416 kb on + strand, within PGA1_c02970 at 286.425 kb on + strand, within PGA1_c02970 at 286.433 kb on - strand, within PGA1_c02970 at 286.463 kb on + strand, within PGA1_c02970 at 286.476 kb on - strand, within PGA1_c02970 at 286.485 kb on - strand, within PGA1_c02970 at 286.505 kb on + strand, within PGA1_c02970 at 286.526 kb on - strand, within PGA1_c02970 at 286.526 kb on - strand, within PGA1_c02970 at 286.536 kb on + strand, within PGA1_c02970 at 286.616 kb on + strand at 286.632 kb on - strand at 286.645 kb on + strand at 286.652 kb on - strand at 286.696 kb on + strand at 286.704 kb on - strand at 287.344 kb on - strand, within PGA1_c02980
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 285,124 - PGA1_c02950 0.87 +0.1 285,130 - PGA1_c02950 0.87 +0.7 285,136 + PGA1_c02950 0.88 +0.9 285,136 + PGA1_c02950 0.88 -1.3 285,136 + PGA1_c02950 0.88 -0.9 285,144 - PGA1_c02950 0.89 -0.8 285,144 - PGA1_c02950 0.89 +0.1 285,144 - PGA1_c02950 0.89 -0.7 285,171 + -1.2 285,331 - PGA1_c02960 0.12 -0.6 285,341 - PGA1_c02960 0.14 -1.2 285,392 + PGA1_c02960 0.19 -0.5 285,433 + PGA1_c02960 0.24 -0.7 285,503 - PGA1_c02960 0.31 +0.6 285,541 + PGA1_c02960 0.36 -1.1 285,554 - PGA1_c02960 0.37 +2.3 285,561 + PGA1_c02960 0.38 +1.0 285,647 - PGA1_c02960 0.47 +0.9 285,696 + PGA1_c02960 0.53 +0.2 285,810 - PGA1_c02960 0.65 +0.0 285,895 + PGA1_c02960 0.74 +0.3 285,903 - PGA1_c02960 0.75 +0.4 285,947 + PGA1_c02960 0.80 +0.4 285,950 - PGA1_c02960 0.81 +0.3 285,955 + PGA1_c02960 0.81 +0.5 285,955 + PGA1_c02960 0.81 +0.4 285,955 + PGA1_c02960 0.81 +1.7 285,963 - PGA1_c02960 0.82 +0.3 285,978 + PGA1_c02960 0.84 +0.0 285,986 - PGA1_c02960 0.84 -1.0 285,992 + PGA1_c02960 0.85 -1.1 286,013 + PGA1_c02960 0.87 +0.3 286,104 + +0.2 286,108 + +0.1 286,108 + -0.4 286,110 - +0.6 286,111 - -0.3 286,153 + +0.7 286,161 - -0.0 286,161 - +0.6 286,186 + PGA1_c02970 0.12 -0.2 286,243 + PGA1_c02970 0.23 +0.7 286,243 + PGA1_c02970 0.23 -0.5 286,243 + PGA1_c02970 0.23 +0.3 286,401 - PGA1_c02970 0.53 -1.1 286,416 + PGA1_c02970 0.55 +0.5 286,425 + PGA1_c02970 0.57 -0.3 286,433 - PGA1_c02970 0.59 +1.2 286,463 + PGA1_c02970 0.64 -1.0 286,476 - PGA1_c02970 0.67 +0.6 286,485 - PGA1_c02970 0.69 +1.2 286,505 + PGA1_c02970 0.72 +0.2 286,526 - PGA1_c02970 0.76 +0.0 286,526 - PGA1_c02970 0.76 -0.5 286,536 + PGA1_c02970 0.78 -1.4 286,616 + +0.9 286,632 - -0.0 286,645 + -1.8 286,652 - +0.7 286,696 + -0.4 286,704 - +0.7 287,344 - PGA1_c02980 0.46 -2.3
Or see this region's nucleotide sequence