Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2707

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2706 and Dshi_2707 are separated by 54 nucleotidesDshi_2707 and Dshi_2708 are separated by 108 nucleotides Dshi_2706: Dshi_2706 - major facilitator superfamily MFS_1 (RefSeq), at 2,866,405 to 2,867,619 _2706 Dshi_2707: Dshi_2707 - methionyl-tRNA synthetase (RefSeq), at 2,867,674 to 2,869,392 _2707 Dshi_2708: Dshi_2708 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,869,501 to 2,871,093 _2708 Position (kb) 2867 2868 2869 2870Strain fitness (log2 ratio) -1 0 1 2at 2866.681 kb on + strand, within Dshi_2706at 2866.686 kb on + strand, within Dshi_2706at 2866.717 kb on - strand, within Dshi_2706at 2866.799 kb on + strand, within Dshi_2706at 2866.823 kb on - strand, within Dshi_2706at 2866.888 kb on - strand, within Dshi_2706at 2866.989 kb on - strand, within Dshi_2706at 2867.032 kb on + strand, within Dshi_2706at 2867.032 kb on + strand, within Dshi_2706at 2867.042 kb on + strand, within Dshi_2706at 2867.050 kb on - strand, within Dshi_2706at 2867.083 kb on - strand, within Dshi_2706at 2867.185 kb on - strand, within Dshi_2706at 2867.255 kb on - strand, within Dshi_2706at 2867.338 kb on + strand, within Dshi_2706at 2867.475 kb on + strand, within Dshi_2706at 2867.557 kb on + strandat 2867.570 kb on - strandat 2869.426 kb on + strandat 2869.426 kb on + strandat 2869.497 kb on + strandat 2869.571 kb on + strandat 2869.833 kb on - strand, within Dshi_2708at 2869.867 kb on - strand, within Dshi_2708at 2869.923 kb on + strand, within Dshi_2708at 2870.307 kb on + strand, within Dshi_2708at 2870.345 kb on - strand, within Dshi_2708at 2870.350 kb on - strand, within Dshi_2708

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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2,866,681 + Dshi_2706 0.23 +0.9
2,866,686 + Dshi_2706 0.23 -0.0
2,866,717 - Dshi_2706 0.26 +0.4
2,866,799 + Dshi_2706 0.32 -0.0
2,866,823 - Dshi_2706 0.34 -0.0
2,866,888 - Dshi_2706 0.40 +0.4
2,866,989 - Dshi_2706 0.48 -0.7
2,867,032 + Dshi_2706 0.52 +0.7
2,867,032 + Dshi_2706 0.52 +0.2
2,867,042 + Dshi_2706 0.52 +0.3
2,867,050 - Dshi_2706 0.53 -0.0
2,867,083 - Dshi_2706 0.56 +0.7
2,867,185 - Dshi_2706 0.64 -0.7
2,867,255 - Dshi_2706 0.70 -0.2
2,867,338 + Dshi_2706 0.77 +0.6
2,867,475 + Dshi_2706 0.88 +0.1
2,867,557 + +0.4
2,867,570 - +0.9
2,869,426 + +0.9
2,869,426 + -0.4
2,869,497 + +1.1
2,869,571 + +1.5
2,869,833 - Dshi_2708 0.21 +1.5
2,869,867 - Dshi_2708 0.23 +2.6
2,869,923 + Dshi_2708 0.26 +2.1
2,870,307 + Dshi_2708 0.51 +1.1
2,870,345 - Dshi_2708 0.53 +2.0
2,870,350 - Dshi_2708 0.53 +1.2

Or see this region's nucleotide sequence