Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1589

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1587 and Dshi_1588 overlap by 10 nucleotidesDshi_1588 and Dshi_1589 overlap by 4 nucleotidesDshi_1589 and Dshi_1590 are separated by 75 nucleotides Dshi_1587: Dshi_1587 - GMP synthase, large subunit (RefSeq), at 1,653,185 to 1,654,747 _1587 Dshi_1588: Dshi_1588 - protein of unknown function DUF218 (RefSeq), at 1,654,738 to 1,655,379 _1588 Dshi_1589: Dshi_1589 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,655,376 to 1,656,263 _1589 Dshi_1590: Dshi_1590 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,656,339 to 1,657,472 _1590 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -2 -1 0 1at 1654.878 kb on - strand, within Dshi_1588at 1654.885 kb on - strand, within Dshi_1588at 1655.005 kb on - strand, within Dshi_1588at 1655.064 kb on + strand, within Dshi_1588at 1655.088 kb on + strand, within Dshi_1588at 1655.100 kb on + strand, within Dshi_1588at 1655.118 kb on - strand, within Dshi_1588at 1655.230 kb on - strand, within Dshi_1588at 1655.340 kb on + strandat 1655.484 kb on - strand, within Dshi_1589at 1655.493 kb on - strand, within Dshi_1589at 1655.524 kb on + strand, within Dshi_1589at 1655.532 kb on - strand, within Dshi_1589at 1655.589 kb on - strand, within Dshi_1589at 1655.649 kb on + strand, within Dshi_1589at 1655.657 kb on - strand, within Dshi_1589at 1655.821 kb on + strand, within Dshi_1589at 1655.821 kb on + strand, within Dshi_1589at 1655.858 kb on - strand, within Dshi_1589at 1655.932 kb on + strand, within Dshi_1589at 1655.932 kb on + strand, within Dshi_1589at 1655.955 kb on - strand, within Dshi_1589at 1655.984 kb on - strand, within Dshi_1589at 1655.989 kb on + strand, within Dshi_1589at 1656.013 kb on + strand, within Dshi_1589at 1656.017 kb on - strand, within Dshi_1589at 1656.019 kb on + strand, within Dshi_1589at 1656.066 kb on + strand, within Dshi_1589at 1656.074 kb on - strand, within Dshi_1589at 1656.087 kb on - strand, within Dshi_1589at 1656.152 kb on - strand, within Dshi_1589at 1656.159 kb on + strand, within Dshi_1589at 1656.159 kb on + strand, within Dshi_1589at 1656.168 kb on - strand, within Dshi_1589at 1656.168 kb on - strand, within Dshi_1589at 1656.317 kb on - strandat 1656.411 kb on + strandat 1656.482 kb on + strand, within Dshi_1590at 1656.562 kb on - strand, within Dshi_1590at 1656.566 kb on - strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.623 kb on + strand, within Dshi_1590at 1656.633 kb on + strand, within Dshi_1590at 1656.802 kb on - strand, within Dshi_1590at 1657.072 kb on - strand, within Dshi_1590

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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1,654,878 - Dshi_1588 0.22 +0.6
1,654,885 - Dshi_1588 0.23 +0.0
1,655,005 - Dshi_1588 0.42 +0.3
1,655,064 + Dshi_1588 0.51 +0.5
1,655,088 + Dshi_1588 0.55 +0.4
1,655,100 + Dshi_1588 0.56 +0.6
1,655,118 - Dshi_1588 0.59 +0.5
1,655,230 - Dshi_1588 0.77 -0.4
1,655,340 + -0.0
1,655,484 - Dshi_1589 0.12 -0.2
1,655,493 - Dshi_1589 0.13 +0.5
1,655,524 + Dshi_1589 0.17 -1.0
1,655,532 - Dshi_1589 0.18 +1.0
1,655,589 - Dshi_1589 0.24 +0.0
1,655,649 + Dshi_1589 0.31 -0.1
1,655,657 - Dshi_1589 0.32 -1.2
1,655,821 + Dshi_1589 0.50 -0.1
1,655,821 + Dshi_1589 0.50 -0.7
1,655,858 - Dshi_1589 0.54 +0.7
1,655,932 + Dshi_1589 0.63 -0.2
1,655,932 + Dshi_1589 0.63 +0.2
1,655,955 - Dshi_1589 0.65 -1.0
1,655,984 - Dshi_1589 0.68 +0.6
1,655,989 + Dshi_1589 0.69 -0.0
1,656,013 + Dshi_1589 0.72 -0.8
1,656,017 - Dshi_1589 0.72 +0.9
1,656,019 + Dshi_1589 0.72 -0.5
1,656,066 + Dshi_1589 0.78 +0.5
1,656,074 - Dshi_1589 0.79 -0.7
1,656,087 - Dshi_1589 0.80 -0.7
1,656,152 - Dshi_1589 0.87 +0.2
1,656,159 + Dshi_1589 0.88 +0.1
1,656,159 + Dshi_1589 0.88 +0.2
1,656,168 - Dshi_1589 0.89 +0.1
1,656,168 - Dshi_1589 0.89 -0.1
1,656,317 - -0.3
1,656,411 + -2.3
1,656,482 + Dshi_1590 0.13 -2.2
1,656,562 - Dshi_1590 0.20 +0.2
1,656,566 - Dshi_1590 0.20 +0.3
1,656,623 + Dshi_1590 0.25 +0.1
1,656,623 + Dshi_1590 0.25 +0.2
1,656,623 + Dshi_1590 0.25 +0.3
1,656,633 + Dshi_1590 0.26 +0.3
1,656,802 - Dshi_1590 0.41 -0.3
1,657,072 - Dshi_1590 0.65 -0.4

Or see this region's nucleotide sequence