Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1044 and Dshi_1045 overlap by 4 nucleotides Dshi_1045 and Dshi_1046 overlap by 4 nucleotides Dshi_1046 and Dshi_1047 overlap by 4 nucleotides Dshi_1047 and Dshi_1048 are separated by 1 nucleotides
Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054
_1044
Dshi_1045: Dshi_1045 - HpcH/HpaI aldolase (RefSeq), at 1,079,051 to 1,079,896
_1045
Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023
_1046
Dshi_1047: Dshi_1047 - hypothetical protein (RefSeq), at 1,081,020 to 1,081,880
_1047
Dshi_1048: Dshi_1048 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,081,882 to 1,082,679
_1048
Position (kb)
1079
1080
1081
1082 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1078.933 kb on + strand, within Dshi_1044 at 1078.978 kb on + strand, within Dshi_1044 at 1079.034 kb on + strand at 1079.246 kb on + strand, within Dshi_1045 at 1079.782 kb on + strand, within Dshi_1045 at 1079.795 kb on + strand, within Dshi_1045 at 1079.802 kb on + strand, within Dshi_1045 at 1079.949 kb on + strand at 1079.956 kb on + strand at 1080.076 kb on - strand, within Dshi_1046 at 1080.286 kb on + strand, within Dshi_1046 at 1080.383 kb on + strand, within Dshi_1046 at 1080.421 kb on - strand, within Dshi_1046 at 1080.531 kb on - strand, within Dshi_1046 at 1080.656 kb on - strand, within Dshi_1046 at 1080.895 kb on + strand, within Dshi_1046 at 1080.936 kb on + strand at 1080.946 kb on + strand at 1080.965 kb on - strand at 1081.239 kb on - strand, within Dshi_1047 at 1081.244 kb on + strand, within Dshi_1047 at 1081.252 kb on - strand, within Dshi_1047 at 1081.254 kb on + strand, within Dshi_1047 at 1081.262 kb on - strand, within Dshi_1047 at 1081.269 kb on + strand, within Dshi_1047 at 1081.269 kb on + strand, within Dshi_1047 at 1081.345 kb on + strand, within Dshi_1047 at 1081.348 kb on - strand, within Dshi_1047 at 1081.358 kb on - strand, within Dshi_1047 at 1081.454 kb on + strand, within Dshi_1047 at 1081.454 kb on + strand, within Dshi_1047 at 1081.458 kb on - strand, within Dshi_1047 at 1081.462 kb on - strand, within Dshi_1047 at 1081.564 kb on - strand, within Dshi_1047 at 1081.658 kb on + strand, within Dshi_1047 at 1081.658 kb on + strand, within Dshi_1047 at 1081.663 kb on + strand, within Dshi_1047 at 1081.782 kb on - strand, within Dshi_1047 at 1081.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 1,078,933 + Dshi_1044 0.83 -1.1 1,078,978 + Dshi_1044 0.89 +0.1 1,079,034 + -1.5 1,079,246 + Dshi_1045 0.23 -0.4 1,079,782 + Dshi_1045 0.86 -0.3 1,079,795 + Dshi_1045 0.88 +0.1 1,079,802 + Dshi_1045 0.89 -0.2 1,079,949 + -1.8 1,079,956 + -0.4 1,080,076 - Dshi_1046 0.16 +0.3 1,080,286 + Dshi_1046 0.35 -0.9 1,080,383 + Dshi_1046 0.43 +1.5 1,080,421 - Dshi_1046 0.47 -0.7 1,080,531 - Dshi_1046 0.56 -1.7 1,080,656 - Dshi_1046 0.67 -1.7 1,080,895 + Dshi_1046 0.89 -0.4 1,080,936 + +1.1 1,080,946 + -0.4 1,080,965 - -0.2 1,081,239 - Dshi_1047 0.25 +1.1 1,081,244 + Dshi_1047 0.26 -0.9 1,081,252 - Dshi_1047 0.27 -0.4 1,081,254 + Dshi_1047 0.27 -0.4 1,081,262 - Dshi_1047 0.28 +1.8 1,081,269 + Dshi_1047 0.29 +0.8 1,081,269 + Dshi_1047 0.29 +0.5 1,081,345 + Dshi_1047 0.38 -0.2 1,081,348 - Dshi_1047 0.38 +0.8 1,081,358 - Dshi_1047 0.39 +0.7 1,081,454 + Dshi_1047 0.50 +0.3 1,081,454 + Dshi_1047 0.50 -0.0 1,081,458 - Dshi_1047 0.51 +0.8 1,081,462 - Dshi_1047 0.51 -0.6 1,081,564 - Dshi_1047 0.63 +1.4 1,081,658 + Dshi_1047 0.74 -0.2 1,081,658 + Dshi_1047 0.74 -1.1 1,081,663 + Dshi_1047 0.75 -0.2 1,081,782 - Dshi_1047 0.89 -0.8 1,081,960 + -0.7
Or see this region's nucleotide sequence