Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1046

Experiment: Carbon source Sucrose 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1044 and Dshi_1045 overlap by 4 nucleotidesDshi_1045 and Dshi_1046 overlap by 4 nucleotidesDshi_1046 and Dshi_1047 overlap by 4 nucleotidesDshi_1047 and Dshi_1048 are separated by 1 nucleotides Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054 _1044 Dshi_1045: Dshi_1045 - HpcH/HpaI aldolase (RefSeq), at 1,079,051 to 1,079,896 _1045 Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023 _1046 Dshi_1047: Dshi_1047 - hypothetical protein (RefSeq), at 1,081,020 to 1,081,880 _1047 Dshi_1048: Dshi_1048 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,081,882 to 1,082,679 _1048 Position (kb) 1079 1080 1081 1082Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.933 kb on + strand, within Dshi_1044at 1078.978 kb on + strand, within Dshi_1044at 1079.034 kb on + strandat 1079.246 kb on + strand, within Dshi_1045at 1079.782 kb on + strand, within Dshi_1045at 1079.795 kb on + strand, within Dshi_1045at 1079.802 kb on + strand, within Dshi_1045at 1079.949 kb on + strandat 1079.956 kb on + strandat 1080.076 kb on - strand, within Dshi_1046at 1080.286 kb on + strand, within Dshi_1046at 1080.383 kb on + strand, within Dshi_1046at 1080.421 kb on - strand, within Dshi_1046at 1080.531 kb on - strand, within Dshi_1046at 1080.656 kb on - strand, within Dshi_1046at 1080.895 kb on + strand, within Dshi_1046at 1080.936 kb on + strandat 1080.946 kb on + strandat 1080.965 kb on - strandat 1081.239 kb on - strand, within Dshi_1047at 1081.244 kb on + strand, within Dshi_1047at 1081.252 kb on - strand, within Dshi_1047at 1081.254 kb on + strand, within Dshi_1047at 1081.262 kb on - strand, within Dshi_1047at 1081.269 kb on + strand, within Dshi_1047at 1081.269 kb on + strand, within Dshi_1047at 1081.345 kb on + strand, within Dshi_1047at 1081.348 kb on - strand, within Dshi_1047at 1081.358 kb on - strand, within Dshi_1047at 1081.454 kb on + strand, within Dshi_1047at 1081.454 kb on + strand, within Dshi_1047at 1081.458 kb on - strand, within Dshi_1047at 1081.462 kb on - strand, within Dshi_1047at 1081.564 kb on - strand, within Dshi_1047at 1081.658 kb on + strand, within Dshi_1047at 1081.658 kb on + strand, within Dshi_1047at 1081.663 kb on + strand, within Dshi_1047at 1081.782 kb on - strand, within Dshi_1047at 1081.960 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
remove
1,078,933 + Dshi_1044 0.83 -1.1
1,078,978 + Dshi_1044 0.89 +0.1
1,079,034 + -1.5
1,079,246 + Dshi_1045 0.23 -0.4
1,079,782 + Dshi_1045 0.86 -0.3
1,079,795 + Dshi_1045 0.88 +0.1
1,079,802 + Dshi_1045 0.89 -0.2
1,079,949 + -1.8
1,079,956 + -0.4
1,080,076 - Dshi_1046 0.16 +0.3
1,080,286 + Dshi_1046 0.35 -0.9
1,080,383 + Dshi_1046 0.43 +1.5
1,080,421 - Dshi_1046 0.47 -0.7
1,080,531 - Dshi_1046 0.56 -1.7
1,080,656 - Dshi_1046 0.67 -1.7
1,080,895 + Dshi_1046 0.89 -0.4
1,080,936 + +1.1
1,080,946 + -0.4
1,080,965 - -0.2
1,081,239 - Dshi_1047 0.25 +1.1
1,081,244 + Dshi_1047 0.26 -0.9
1,081,252 - Dshi_1047 0.27 -0.4
1,081,254 + Dshi_1047 0.27 -0.4
1,081,262 - Dshi_1047 0.28 +1.8
1,081,269 + Dshi_1047 0.29 +0.8
1,081,269 + Dshi_1047 0.29 +0.5
1,081,345 + Dshi_1047 0.38 -0.2
1,081,348 - Dshi_1047 0.38 +0.8
1,081,358 - Dshi_1047 0.39 +0.7
1,081,454 + Dshi_1047 0.50 +0.3
1,081,454 + Dshi_1047 0.50 -0.0
1,081,458 - Dshi_1047 0.51 +0.8
1,081,462 - Dshi_1047 0.51 -0.6
1,081,564 - Dshi_1047 0.63 +1.4
1,081,658 + Dshi_1047 0.74 -0.2
1,081,658 + Dshi_1047 0.74 -1.1
1,081,663 + Dshi_1047 0.75 -0.2
1,081,782 - Dshi_1047 0.89 -0.8
1,081,960 + -0.7

Or see this region's nucleotide sequence