Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0976 and Dshi_R0022 are separated by 197 nucleotides Dshi_R0022 and Dshi_0977 are separated by 294 nucleotides Dshi_0977 and Dshi_0978 overlap by 4 nucleotides Dshi_0978 and Dshi_0979 are separated by 60 nucleotides
Dshi_0976: Dshi_0976 - resolvase-like protein (RefSeq), at 997,950 to 998,168
_0976
Dshi_R0022: Dshi_R0022 - tRNA-Thr (RefSeq), at 998,366 to 998,440
_R0022
Dshi_0977: Dshi_0977 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 998,735 to 1,000,003
_0977
Dshi_0978: Dshi_0978 - hypothetical protein (RefSeq), at 1,000,000 to 1,000,476
_0978
Dshi_0979: Dshi_0979 - Histidinol dehydrogenase (RefSeq), at 1,000,537 to 1,001,853
_0979
Position (kb) 998
999
1000
1001 Strain fitness (log2 ratio) -1
0
1 at 997.805 kb on + strand at 997.846 kb on + strand at 997.847 kb on + strand at 997.855 kb on - strand at 997.857 kb on + strand at 997.865 kb on - strand at 997.865 kb on - strand at 997.875 kb on - strand at 997.960 kb on + strand at 997.995 kb on - strand, within Dshi_0976 at 998.019 kb on + strand, within Dshi_0976 at 998.089 kb on + strand, within Dshi_0976 at 998.231 kb on + strand at 998.231 kb on + strand at 998.256 kb on - strand at 998.282 kb on - strand at 998.305 kb on - strand at 998.534 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.546 kb on - strand at 998.590 kb on - strand at 1000.124 kb on - strand, within Dshi_0978 at 1000.144 kb on - strand, within Dshi_0978 at 1000.186 kb on - strand, within Dshi_0978 at 1000.271 kb on + strand, within Dshi_0978 at 1000.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 997,805 + -0.7 997,846 + -0.4 997,847 + -0.7 997,855 - -0.7 997,857 + +1.5 997,865 - -0.8 997,865 - +1.1 997,875 - +0.4 997,960 + -0.9 997,995 - Dshi_0976 0.21 -0.6 998,019 + Dshi_0976 0.32 -0.6 998,089 + Dshi_0976 0.63 -1.1 998,231 + -0.3 998,231 + +1.1 998,256 - +0.6 998,282 - +0.3 998,305 - -0.4 998,534 - +1.0 998,535 - -0.5 998,535 - +0.3 998,535 - -0.8 998,546 - +0.7 998,590 - +0.3 1,000,124 - Dshi_0978 0.26 +0.5 1,000,144 - Dshi_0978 0.30 +1.5 1,000,186 - Dshi_0978 0.39 -0.2 1,000,271 + Dshi_0978 0.57 -1.2 1,000,439 + -1.7
Or see this region's nucleotide sequence