Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0836

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0835 and Dshi_0836 are separated by 5 nucleotidesDshi_0836 and Dshi_0837 are separated by 11 nucleotidesDshi_0837 and Dshi_0838 are separated by 280 nucleotides Dshi_0835: Dshi_0835 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 844,051 to 846,264 _0835 Dshi_0836: Dshi_0836 - acetyl-CoA acetyltransferase (RefSeq), at 846,270 to 847,481 _0836 Dshi_0837: Dshi_0837 - Glutathione S-transferase domain (RefSeq), at 847,493 to 848,128 _0837 Dshi_0838: Dshi_0838 - acyl-CoA dehydrogenase domain protein (RefSeq), at 848,409 to 849,557 _0838 Position (kb) 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1at 845.292 kb on + strand, within Dshi_0835at 845.570 kb on + strand, within Dshi_0835at 845.654 kb on + strand, within Dshi_0835at 845.734 kb on - strand, within Dshi_0835at 846.004 kb on + strand, within Dshi_0835at 846.358 kb on - strandat 846.360 kb on + strandat 846.455 kb on + strand, within Dshi_0836at 846.492 kb on - strand, within Dshi_0836at 846.506 kb on + strand, within Dshi_0836at 846.569 kb on + strand, within Dshi_0836at 846.627 kb on - strand, within Dshi_0836at 846.820 kb on - strand, within Dshi_0836at 846.890 kb on - strand, within Dshi_0836at 846.938 kb on - strand, within Dshi_0836at 846.967 kb on + strand, within Dshi_0836at 847.035 kb on - strand, within Dshi_0836at 847.076 kb on - strand, within Dshi_0836at 847.229 kb on + strand, within Dshi_0836at 847.367 kb on - strandat 847.440 kb on - strandat 847.472 kb on - strandat 847.511 kb on + strandat 847.511 kb on + strandat 847.520 kb on + strandat 847.533 kb on - strandat 847.554 kb on + strandat 847.555 kb on + strandat 847.561 kb on - strand, within Dshi_0837at 847.562 kb on - strand, within Dshi_0837at 847.615 kb on + strand, within Dshi_0837at 847.672 kb on + strand, within Dshi_0837at 847.682 kb on + strand, within Dshi_0837at 847.885 kb on - strand, within Dshi_0837at 847.933 kb on + strand, within Dshi_0837at 847.942 kb on - strand, within Dshi_0837at 848.004 kb on - strand, within Dshi_0837at 848.004 kb on - strand, within Dshi_0837at 848.137 kb on - strandat 848.158 kb on - strandat 848.165 kb on + strandat 848.168 kb on - strandat 848.254 kb on + strandat 848.257 kb on - strandat 848.269 kb on - strandat 848.381 kb on - strandat 848.389 kb on - strandat 848.407 kb on + strandat 848.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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845,292 + Dshi_0835 0.56 -0.6
845,570 + Dshi_0835 0.69 +0.1
845,654 + Dshi_0835 0.72 -0.4
845,734 - Dshi_0835 0.76 +0.8
846,004 + Dshi_0835 0.88 -0.3
846,358 - -0.7
846,360 + -0.3
846,455 + Dshi_0836 0.15 -2.5
846,492 - Dshi_0836 0.18 +0.0
846,506 + Dshi_0836 0.19 +0.2
846,569 + Dshi_0836 0.25 -1.8
846,627 - Dshi_0836 0.29 -2.8
846,820 - Dshi_0836 0.45 -1.0
846,890 - Dshi_0836 0.51 +0.2
846,938 - Dshi_0836 0.55 -0.0
846,967 + Dshi_0836 0.58 -0.8
847,035 - Dshi_0836 0.63 +0.2
847,076 - Dshi_0836 0.67 -1.0
847,229 + Dshi_0836 0.79 -2.0
847,367 - +1.1
847,440 - +0.8
847,472 - +0.2
847,511 + +0.0
847,511 + -0.9
847,520 + +0.1
847,533 - +0.9
847,554 + -1.1
847,555 + -0.8
847,561 - Dshi_0837 0.11 +0.6
847,562 - Dshi_0837 0.11 +0.0
847,615 + Dshi_0837 0.19 +0.0
847,672 + Dshi_0837 0.28 +0.5
847,682 + Dshi_0837 0.30 -0.7
847,885 - Dshi_0837 0.62 -1.7
847,933 + Dshi_0837 0.69 -0.1
847,942 - Dshi_0837 0.71 -0.3
848,004 - Dshi_0837 0.80 -0.5
848,004 - Dshi_0837 0.80 +0.6
848,137 - -0.4
848,158 - +0.2
848,165 + -0.4
848,168 - -0.9
848,254 + -0.8
848,257 - +0.6
848,269 - +0.3
848,381 - +0.6
848,389 - +0.2
848,407 + -0.5
848,415 - -0.3

Or see this region's nucleotide sequence