Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0317 and Dshi_0318 are separated by 349 nucleotides Dshi_0318 and Dshi_0319 are separated by 120 nucleotides
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308
_0318
Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664
_0319
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand at 306.265 kb on - strand at 306.273 kb on + strand at 306.281 kb on - strand at 306.281 kb on - strand at 306.293 kb on - strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.363 kb on - strand at 306.373 kb on + strand at 306.381 kb on - strand at 306.381 kb on - strand at 306.388 kb on + strand at 306.388 kb on + strand at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.402 kb on + strand, within Dshi_0318 at 306.407 kb on + strand, within Dshi_0318 at 306.458 kb on + strand, within Dshi_0318 at 306.466 kb on - strand, within Dshi_0318 at 306.469 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.521 kb on + strand, within Dshi_0318 at 306.538 kb on + strand, within Dshi_0318 at 306.541 kb on - strand, within Dshi_0318 at 306.546 kb on - strand, within Dshi_0318 at 306.556 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.668 kb on + strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.727 kb on - strand, within Dshi_0318 at 306.914 kb on + strand, within Dshi_0318 at 306.930 kb on + strand, within Dshi_0318 at 306.973 kb on - strand, within Dshi_0318 at 307.042 kb on + strand, within Dshi_0318 at 307.113 kb on + strand, within Dshi_0318 at 307.277 kb on - strand at 307.277 kb on - strand at 307.279 kb on + strand at 307.284 kb on + strand at 307.284 kb on + strand at 307.287 kb on - strand at 307.287 kb on - strand at 307.292 kb on - strand at 307.372 kb on + strand at 307.377 kb on + strand at 307.380 kb on - strand at 307.380 kb on - strand at 307.382 kb on + strand at 307.421 kb on + strand at 307.426 kb on + strand at 307.528 kb on + strand at 307.573 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.598 kb on - strand, within Dshi_0319 at 307.604 kb on + strand, within Dshi_0319 at 307.641 kb on + strand, within Dshi_0319 at 307.674 kb on + strand, within Dshi_0319 at 307.740 kb on - strand, within Dshi_0319 at 307.782 kb on + strand, within Dshi_0319 at 307.887 kb on - strand, within Dshi_0319 at 307.946 kb on - strand, within Dshi_0319 at 307.965 kb on - strand, within Dshi_0319 at 307.968 kb on - strand, within Dshi_0319 at 307.983 kb on - strand, within Dshi_0319 at 307.993 kb on + strand, within Dshi_0319 at 307.995 kb on + strand, within Dshi_0319 at 308.111 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.233 kb on - strand, within Dshi_0319 at 308.269 kb on + strand, within Dshi_0319
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 305,936 + -0.7 305,948 + -0.2 305,948 + +0.9 305,948 + -1.2 305,948 + +1.2 305,948 + +0.1 305,948 + -0.2 305,948 + -0.7 305,948 + -0.1 305,948 + -0.5 305,948 + +0.9 305,948 + -1.8 305,948 + -1.0 305,948 + -0.8 305,948 + +0.4 305,948 + -1.3 305,948 + -0.9 305,948 + -0.1 305,948 + +0.8 305,948 + -0.4 305,948 + +0.0 305,948 + -0.6 305,948 + -3.3 305,948 + -0.2 305,948 + -1.6 305,948 + -0.4 305,948 + +0.6 305,956 - +0.0 305,956 - +0.5 305,956 - -0.1 305,956 - -0.6 305,956 - -1.1 305,956 - -1.5 305,956 - +3.1 305,956 - -3.3 305,956 - -0.2 305,956 - -1.8 305,956 - +0.1 305,956 - -1.3 305,956 - -1.0 305,956 - -0.4 305,956 - +0.1 305,956 - +1.9 305,956 - +0.2 305,956 - -0.3 305,956 - -2.6 305,956 - -0.5 306,024 - +0.4 306,034 - -3.3 306,046 - +0.6 306,075 + +0.0 306,075 + -1.5 306,123 + -2.3 306,140 - +0.2 306,152 - -0.7 306,200 + +0.9 306,200 + -0.4 306,200 + +0.4 306,200 + -1.0 306,200 + -0.1 306,208 - +0.4 306,208 - -0.6 306,208 - +0.6 306,208 - -1.3 306,208 - -0.5 306,217 - -1.1 306,220 - +0.4 306,221 + -2.8 306,265 - +1.0 306,273 + +0.2 306,281 - -0.2 306,281 - -0.4 306,293 - -1.3 306,332 + -1.7 306,332 + -1.2 306,332 + -0.2 306,363 - +0.2 306,373 + +0.8 306,381 - +0.9 306,381 - -1.7 306,388 + -0.1 306,388 + -0.7 306,396 - Dshi_0318 0.10 -0.2 306,396 - Dshi_0318 0.10 +0.6 306,396 - Dshi_0318 0.10 -0.3 306,402 + Dshi_0318 0.11 -1.1 306,407 + Dshi_0318 0.11 -0.0 306,458 + Dshi_0318 0.16 +0.1 306,466 - Dshi_0318 0.17 -1.0 306,469 + Dshi_0318 0.17 -0.8 306,474 + Dshi_0318 0.18 -1.1 306,474 + Dshi_0318 0.18 -0.5 306,507 + Dshi_0318 0.21 -0.2 306,507 + Dshi_0318 0.21 +0.3 306,521 + Dshi_0318 0.23 -0.1 306,538 + Dshi_0318 0.24 +0.0 306,541 - Dshi_0318 0.24 -1.5 306,546 - Dshi_0318 0.25 -0.0 306,556 + Dshi_0318 0.26 -1.8 306,661 + Dshi_0318 0.36 +0.6 306,661 + Dshi_0318 0.36 +0.3 306,668 + Dshi_0318 0.37 +0.0 306,669 - Dshi_0318 0.37 +0.1 306,669 - Dshi_0318 0.37 +0.8 306,727 - Dshi_0318 0.43 -0.4 306,914 + Dshi_0318 0.61 -1.0 306,930 + Dshi_0318 0.63 +0.5 306,973 - Dshi_0318 0.67 -2.2 307,042 + Dshi_0318 0.74 +0.1 307,113 + Dshi_0318 0.81 -0.6 307,277 - -1.3 307,277 - -1.1 307,279 + -0.4 307,284 + -0.3 307,284 + -2.2 307,287 - -1.3 307,287 - -0.7 307,292 - -1.8 307,372 + +0.4 307,377 + -0.3 307,380 - +0.7 307,380 - +0.2 307,382 + +0.3 307,421 + -0.1 307,426 + +0.1 307,528 + +0.4 307,573 + Dshi_0319 0.12 +0.4 307,588 + Dshi_0319 0.13 -0.6 307,588 + Dshi_0319 0.13 -0.2 307,598 - Dshi_0319 0.14 +0.3 307,604 + Dshi_0319 0.14 +0.9 307,641 + Dshi_0319 0.17 -0.2 307,674 + Dshi_0319 0.20 +0.1 307,740 - Dshi_0319 0.25 -2.5 307,782 + Dshi_0319 0.29 -0.0 307,887 - Dshi_0319 0.37 -0.2 307,946 - Dshi_0319 0.42 -0.8 307,965 - Dshi_0319 0.43 -0.9 307,968 - Dshi_0319 0.44 +0.2 307,983 - Dshi_0319 0.45 +0.8 307,993 + Dshi_0319 0.46 -1.5 307,995 + Dshi_0319 0.46 +0.1 308,111 + Dshi_0319 0.55 +1.1 308,210 + Dshi_0319 0.63 -1.6 308,210 + Dshi_0319 0.63 -0.6 308,210 + Dshi_0319 0.63 -1.7 308,218 - Dshi_0319 0.64 -0.6 308,218 - Dshi_0319 0.64 -0.3 308,233 - Dshi_0319 0.65 +0.5 308,269 + Dshi_0319 0.68 -0.4
Or see this region's nucleotide sequence