Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2364

Experiment: BHIS with Cefoxitin 0.0125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cefoxitin 0.0125 mM
2,946,634	+		BT2363	0.61	-2.6
2,946,668	-		BT2363	0.63	-1.1
2,946,724	+		BT2363	0.66	-2.1
2,946,783	-		BT2363	0.69	-2.7
2,946,809	+		BT2363	0.70	+0.1
2,946,809	+		BT2363	0.70	-0.1
2,946,809	+		BT2363	0.70	-0.8
2,946,809	+		BT2363	0.70	-1.1
2,946,810	-		BT2363	0.70	-1.1
2,946,851	-		BT2363	0.73	-1.1
2,946,908	+		BT2363	0.76	-0.3
2,946,911	+		BT2363	0.76	-0.1
2,946,940	+		BT2363	0.77	-1.7
2,946,945	-		BT2363	0.78	-1.2
2,946,948	-		BT2363	0.78	-1.1
2,946,998	-		BT2363	0.81	-0.8
2,947,006	+		BT2363	0.81	-0.1
2,947,077	-		BT2363	0.85	-1.2
2,947,085	-		BT2363	0.85	-1.6
2,947,085	-		BT2363	0.85	-2.0
2,947,138	+		BT2363	0.88	-1.1
2,947,143	+		BT2363	0.88	-2.3
2,947,144	-		BT2363	0.88	-1.7
2,947,167	+		BT2363	0.90	+0.4
2,947,167	+		BT2363	0.90	-1.1
2,947,168	-		BT2363	0.90	-0.7
2,947,178	+				-0.1
2,947,284	+				-1.2
2,947,284	+				-1.5
2,947,285	-				+0.7
2,947,352	+				-1.1
2,947,366	+				-0.7
2,947,366	+				-2.7
2,947,369	-				-0.1
2,947,369	-				-2.8
2,947,371	-				-1.1
2,947,371	-				-1.7
2,947,400	-				-0.5
2,947,402	-				-0.7
2,947,478	+				-1.2
2,947,509	+				-1.1
2,947,510	-				-2.5
2,947,514	+				-1.7
2,947,535	+				-1.1
2,947,536	-				+0.0
2,947,536	-				-1.1
2,947,547	-				-0.1
2,947,547	-				+1.5
2,947,547	-				-2.9
2,947,547	-				-1.5
2,947,547	-				-1.4
2,947,548	+				-0.1
2,947,548	+				-2.2
2,947,549	-				-0.8
2,947,549	-				-2.9
2,947,568	+				-0.9
2,947,616	-				+0.9
2,947,628	+				-2.4
2,947,633	+				-1.1
2,947,697	+				+1.9
2,947,697	+				-0.1
2,947,698	-				-0.1
2,947,724	+				-0.3
2,947,836	+				-0.1
2,947,895	-				-1.0
2,947,934	-		BT2364	0.11	-1.7
2,947,949	+		BT2364	0.11	-1.4
2,947,994	+		BT2364	0.13	-2.3
2,948,043	+		BT2364	0.15	-2.7
2,948,048	+		BT2364	0.15	-3.4
2,948,049	-		BT2364	0.15	-0.1
2,948,049	-		BT2364	0.15	-1.6
2,948,161	+		BT2364	0.18	-1.9
2,948,162	-		BT2364	0.18	-0.1
2,948,217	+		BT2364	0.20	+0.3
2,948,218	-		BT2364	0.20	-1.4
2,948,218	-		BT2364	0.20	+0.5
2,948,218	-		BT2364	0.20	-1.8
2,948,219	+		BT2364	0.20	-2.1
2,948,219	+		BT2364	0.20	-2.9
2,948,220	-		BT2364	0.20	-1.4
2,948,313	+		BT2364	0.23	-2.9
2,948,341	+		BT2364	0.24	+1.5
2,948,367	-		BT2364	0.25	-2.9
2,948,377	+		BT2364	0.25	-3.1
2,948,469	+		BT2364	0.28	-3.8
2,948,488	-		BT2364	0.29	-1.8
2,948,488	-		BT2364	0.29	-1.7
2,948,488	-		BT2364	0.29	-1.3
2,948,523	+		BT2364	0.30	-0.1
2,948,524	-		BT2364	0.30	-1.4
2,948,547	+		BT2364	0.31	-2.6
2,948,553	+		BT2364	0.31	-0.1
2,948,553	+		BT2364	0.31	+0.5
2,948,553	+		BT2364	0.31	-1.4
2,948,556	-		BT2364	0.31	-2.1
2,948,620	-		BT2364	0.33	-2.4
2,948,654	+		BT2364	0.34	-0.9
2,948,661	+		BT2364	0.35	-1.8
2,948,676	+		BT2364	0.35	+1.5
2,948,780	+		BT2364	0.38	+0.9
2,948,831	+		BT2364	0.40	+3.3
2,948,832	-		BT2364	0.40	-0.1
2,948,832	-		BT2364	0.40	-0.5
2,948,947	+		BT2364	0.44	-2.7
2,948,981	+		BT2364	0.45	-1.1
2,948,981	+		BT2364	0.45	-1.5
2,948,982	-		BT2364	0.45	-2.1
2,949,044	-		BT2364	0.47	-1.1
2,949,049	-		BT2364	0.47	-2.1
2,949,054	+		BT2364	0.47	-1.7
2,949,054	+		BT2364	0.47	-1.1
2,949,055	-		BT2364	0.47	+2.3
2,949,055	-		BT2364	0.47	-2.8
2,949,078	+		BT2364	0.48	-2.0
2,949,079	-		BT2364	0.48	-1.7
2,949,082	-		BT2364	0.48	-1.4
2,949,082	-		BT2364	0.48	-1.1
2,949,183	+		BT2364	0.52	-1.4
2,949,183	+		BT2364	0.52	-1.4
2,949,184	-		BT2364	0.52	-1.5
2,949,184	-		BT2364	0.52	-1.1
2,949,238	+		BT2364	0.53	+0.1
2,949,246	+		BT2364	0.54	-2.1
2,949,246	+		BT2364	0.54	-1.1
2,949,294	-		BT2364	0.55	-1.5
2,949,374	-		BT2364	0.58	-1.8
2,949,393	+		BT2364	0.58	-0.2
2,949,394	-		BT2364	0.58	-1.3
2,949,409	-		BT2364	0.59	-1.2
2,949,491	+		BT2364	0.62	-2.4
2,949,574	+		BT2364	0.64	-0.1
2,949,575	-		BT2364	0.64	-2.1
2,949,575	-		BT2364	0.64	-1.4
2,949,601	-		BT2364	0.65	+0.3
2,949,618	+		BT2364	0.66	-0.3
2,949,619	-		BT2364	0.66	-1.7
2,949,636	+		BT2364	0.66	-0.1
2,949,765	+		BT2364	0.70	-1.2
2,949,766	-		BT2364	0.71	-1.1
2,949,793	-		BT2364	0.71	-0.7
2,949,831	+		BT2364	0.73	-0.9
2,949,868	+		BT2364	0.74	-2.5
2,949,869	-		BT2364	0.74	-0.1
2,949,911	+		BT2364	0.75	+0.5
2,950,190	-		BT2364	0.84	-2.7
2,950,219	-		BT2364	0.85	-1.1
2,950,241	+		BT2364	0.86	-2.4
2,950,291	-		BT2364	0.88	-1.7
2,950,291	-		BT2364	0.88	-0.1
2,950,291	-		BT2364	0.88	-1.9
2,950,318	-		BT2364	0.88	-1.1
2,950,345	-		BT2364	0.89	-0.5
2,950,345	-		BT2364	0.89	-1.1
2,950,399	+				-0.1
2,950,437	+				+0.9
2,950,531	+				-1.1
2,950,532	-				-3.4
2,950,540	-				-0.8
2,950,585	-				-2.4
2,950,664	-				-1.4
2,950,705	+				-2.3
2,950,705	+				-2.1
2,950,705	+				-1.8
2,950,705	+				-0.4
2,950,723	+				-0.1
2,950,723	+				-0.7
2,950,725	+				-0.1
2,950,726	-				-2.1
2,950,729	+				-3.1
2,950,730	-				-1.6
2,950,880	+		BT2365	0.12	+0.2
2,950,881	-		BT2365	0.12	-0.1
2,950,881	-		BT2365	0.12	-1.1
2,950,900	-		BT2365	0.13	-0.9
2,950,905	+		BT2365	0.13	-0.1
2,950,905	+		BT2365	0.13	-0.7
2,950,934	-		BT2365	0.15	-0.2
2,950,944	-		BT2365	0.16	+0.0
2,950,969	+		BT2365	0.18	-1.5
2,950,980	+		BT2365	0.18	-1.2
2,950,980	+		BT2365	0.18	-1.3
2,950,980	+		BT2365	0.18	-0.4
2,950,986	+		BT2365	0.19	-0.1
2,950,987	-		BT2365	0.19	-2.8
2,951,072	-		BT2365	0.24	-2.1
2,951,108	+		BT2365	0.27	-1.1
2,951,111	+		BT2365	0.27	-1.7
2,951,198	+		BT2365	0.33	-0.2
2,951,228	-		BT2365	0.35	+0.5
2,951,282	-		BT2365	0.38	-0.1
2,951,282	-		BT2365	0.38	+0.9
2,951,292	+		BT2365	0.39	-3.7
2,951,292	+		BT2365	0.39	+0.9
2,951,361	-		BT2365	0.44	-0.8
2,951,363	-		BT2365	0.44	-0.7
2,951,363	-		BT2365	0.44	-3.2
2,951,408	+		BT2365	0.47	-1.1
2,951,408	+		BT2365	0.47	-0.7
2,951,431	-		BT2365	0.48	-2.8
2,951,482	-		BT2365	0.52	-1.0
2,951,506	+		BT2365	0.53	-0.8
2,951,536	+		BT2365	0.55	-0.9
2,951,548	-		BT2365	0.56	-2.0
2,951,605	-		BT2365	0.60	-1.3
2,951,633	+		BT2365	0.62	-2.4