Experiment: BHIS with Cefoxitin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0560 and BT0561 are separated by 16 nucleotides BT0561 and BT0562 overlap by 22 nucleotides BT0562 and BT0563 are separated by 2 nucleotides
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
BT0561: BT0561 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 697,129 to 698,043
BT0561
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597
BT0563
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.103 kb on + strand at 697.113 kb on + strand at 697.238 kb on - strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.347 kb on - strand, within BT0561 at 697.421 kb on + strand, within BT0561 at 697.444 kb on - strand, within BT0561 at 697.625 kb on + strand, within BT0561 at 697.760 kb on + strand, within BT0561 at 697.772 kb on - strand, within BT0561 at 697.789 kb on - strand, within BT0561 at 697.958 kb on - strand at 698.005 kb on - strand at 698.005 kb on - strand at 698.009 kb on - strand at 698.009 kb on - strand at 698.080 kb on + strand at 698.201 kb on + strand, within BT0562 at 698.273 kb on + strand, within BT0562 at 698.388 kb on + strand, within BT0562 at 698.389 kb on - strand, within BT0562 at 698.514 kb on - strand, within BT0562 at 698.606 kb on + strand, within BT0562 at 698.607 kb on - strand, within BT0562 at 698.877 kb on - strand, within BT0562 at 698.894 kb on + strand, within BT0562 at 698.946 kb on + strand, within BT0562 at 698.994 kb on - strand, within BT0562 at 699.313 kb on + strand, within BT0562 at 699.314 kb on - strand, within BT0562 at 699.331 kb on - strand, within BT0562 at 699.505 kb on + strand at 699.505 kb on + strand at 699.593 kb on - strand at 699.775 kb on - strand, within BT0563 at 699.778 kb on + strand, within BT0563 at 699.819 kb on - strand, within BT0563 at 699.820 kb on + strand, within BT0563 at 699.886 kb on + strand, within BT0563 at 699.887 kb on - strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.980 kb on + strand, within BT0563 at 700.107 kb on + strand, within BT0563 at 700.159 kb on - strand, within BT0563 at 700.164 kb on - strand, within BT0563 at 700.324 kb on + strand, within BT0563 at 700.461 kb on - strand, within BT0563
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Cefoxitin 0.0125 mM remove 697,103 + -2.0 697,113 + -0.9 697,238 - BT0561 0.12 -0.2 697,346 + BT0561 0.24 -2.0 697,346 + BT0561 0.24 +0.0 697,347 - BT0561 0.24 -3.0 697,421 + BT0561 0.32 -1.6 697,444 - BT0561 0.34 -2.0 697,625 + BT0561 0.54 -1.6 697,760 + BT0561 0.69 -1.9 697,772 - BT0561 0.70 +0.0 697,789 - BT0561 0.72 -2.3 697,958 - +0.0 698,005 - -2.1 698,005 - +1.0 698,009 - +0.0 698,009 - +0.0 698,080 + -3.2 698,201 + BT0562 0.12 -0.4 698,273 + BT0562 0.17 +0.0 698,388 + BT0562 0.25 +0.3 698,389 - BT0562 0.25 -1.0 698,514 - BT0562 0.33 -1.7 698,606 + BT0562 0.40 -0.5 698,607 - BT0562 0.40 -2.3 698,877 - BT0562 0.58 -2.1 698,894 + BT0562 0.59 -1.2 698,946 + BT0562 0.63 -1.0 698,994 - BT0562 0.66 -2.0 699,313 + BT0562 0.88 +0.0 699,314 - BT0562 0.88 +1.6 699,331 - BT0562 0.89 +0.0 699,505 + -2.0 699,505 + +0.0 699,593 - -1.5 699,775 - BT0563 0.25 -1.0 699,778 + BT0563 0.26 -2.4 699,819 - BT0563 0.29 -1.6 699,820 + BT0563 0.30 -1.0 699,886 + BT0563 0.36 -1.0 699,887 - BT0563 0.36 -1.0 699,890 + BT0563 0.36 -1.6 699,890 + BT0563 0.36 -2.8 699,980 + BT0563 0.44 -2.3 700,107 + BT0563 0.56 -1.0 700,159 - BT0563 0.60 -0.7 700,164 - BT0563 0.61 -1.0 700,324 + BT0563 0.75 -1.0 700,461 - BT0563 0.88 +0.3
Or see this region's nucleotide sequence