Experiment: BHIS with Cefoxitin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0466 and BT0467 are separated by 202 nucleotides BT0467 and BT0468 are separated by 26 nucleotides
BT0466: BT0466 - dTDP-glucose 4,6-dehydratase (NCBI ptt file), at 576,244 to 577,356
BT0466
BT0467: BT0467 - conserved hypothetical protein (NCBI ptt file), at 577,559 to 579,028
BT0467
BT0468: BT0468 - putative F420H2-dehydrogenase 40 kDa subunit (NCBI ptt file), at 579,055 to 580,221
BT0468
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 576.652 kb on - strand, within BT0466 at 576.754 kb on - strand, within BT0466 at 576.754 kb on - strand, within BT0466 at 576.789 kb on + strand, within BT0466 at 576.891 kb on + strand, within BT0466 at 576.974 kb on - strand, within BT0466 at 576.974 kb on - strand, within BT0466 at 576.978 kb on - strand, within BT0466 at 577.039 kb on - strand, within BT0466 at 577.042 kb on - strand, within BT0466 at 577.110 kb on - strand, within BT0466 at 577.113 kb on - strand, within BT0466 at 577.147 kb on - strand, within BT0466 at 577.179 kb on - strand, within BT0466 at 577.278 kb on - strand at 577.278 kb on - strand at 577.343 kb on - strand at 577.442 kb on - strand at 577.494 kb on - strand at 577.517 kb on - strand at 577.537 kb on + strand at 577.578 kb on + strand at 577.579 kb on - strand at 577.676 kb on - strand at 577.678 kb on - strand at 577.774 kb on - strand, within BT0467 at 577.778 kb on - strand, within BT0467 at 577.825 kb on - strand, within BT0467 at 577.855 kb on + strand, within BT0467 at 577.943 kb on - strand, within BT0467 at 577.955 kb on - strand, within BT0467 at 577.955 kb on - strand, within BT0467 at 578.041 kb on - strand, within BT0467 at 578.112 kb on - strand, within BT0467 at 578.362 kb on - strand, within BT0467 at 578.391 kb on + strand, within BT0467 at 578.392 kb on - strand, within BT0467 at 578.402 kb on - strand, within BT0467 at 578.406 kb on - strand, within BT0467 at 578.406 kb on - strand, within BT0467 at 578.406 kb on - strand, within BT0467 at 578.413 kb on + strand, within BT0467 at 578.414 kb on - strand, within BT0467 at 578.486 kb on - strand, within BT0467 at 578.538 kb on + strand, within BT0467 at 578.638 kb on - strand, within BT0467 at 578.643 kb on + strand, within BT0467 at 578.644 kb on - strand, within BT0467 at 578.679 kb on - strand, within BT0467 at 578.679 kb on - strand, within BT0467 at 578.683 kb on - strand, within BT0467 at 578.729 kb on - strand, within BT0467 at 578.777 kb on - strand, within BT0467 at 578.828 kb on - strand, within BT0467 at 578.865 kb on - strand, within BT0467 at 578.927 kb on - strand at 578.927 kb on - strand at 578.932 kb on - strand at 578.932 kb on - strand at 579.180 kb on + strand, within BT0468 at 579.334 kb on - strand, within BT0468 at 579.347 kb on + strand, within BT0468 at 579.503 kb on - strand, within BT0468 at 579.551 kb on + strand, within BT0468 at 579.577 kb on - strand, within BT0468 at 579.637 kb on - strand, within BT0468 at 579.639 kb on - strand, within BT0468 at 579.641 kb on - strand, within BT0468 at 580.026 kb on - strand, within BT0468
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Cefoxitin 0.0125 mM remove 576,652 - BT0466 0.37 -0.0 576,754 - BT0466 0.46 -0.0 576,754 - BT0466 0.46 -2.8 576,789 + BT0466 0.49 -1.2 576,891 + BT0466 0.58 -0.7 576,974 - BT0466 0.66 +2.8 576,974 - BT0466 0.66 -1.0 576,978 - BT0466 0.66 -0.0 577,039 - BT0466 0.71 -0.0 577,042 - BT0466 0.72 -0.0 577,110 - BT0466 0.78 -0.6 577,113 - BT0466 0.78 -1.0 577,147 - BT0466 0.81 -1.0 577,179 - BT0466 0.84 -0.1 577,278 - -1.6 577,278 - -0.0 577,343 - -0.0 577,442 - +1.0 577,494 - -0.9 577,517 - -0.0 577,537 + +1.0 577,578 + -0.0 577,579 - -2.0 577,676 - -2.3 577,678 - -0.0 577,774 - BT0467 0.15 +2.1 577,778 - BT0467 0.15 -2.0 577,825 - BT0467 0.18 +0.7 577,855 + BT0467 0.20 -1.4 577,943 - BT0467 0.26 +0.2 577,955 - BT0467 0.27 -1.0 577,955 - BT0467 0.27 +0.3 578,041 - BT0467 0.33 -2.0 578,112 - BT0467 0.38 -1.4 578,362 - BT0467 0.55 -1.0 578,391 + BT0467 0.57 -1.6 578,392 - BT0467 0.57 +1.6 578,402 - BT0467 0.57 -2.5 578,406 - BT0467 0.58 +0.3 578,406 - BT0467 0.58 -0.0 578,406 - BT0467 0.58 -1.6 578,413 + BT0467 0.58 +1.6 578,414 - BT0467 0.58 -0.0 578,486 - BT0467 0.63 -2.3 578,538 + BT0467 0.67 +1.4 578,638 - BT0467 0.73 +0.9 578,643 + BT0467 0.74 -0.8 578,644 - BT0467 0.74 -2.3 578,679 - BT0467 0.76 +1.0 578,679 - BT0467 0.76 -1.0 578,683 - BT0467 0.76 +0.4 578,729 - BT0467 0.80 -0.6 578,777 - BT0467 0.83 -1.0 578,828 - BT0467 0.86 +1.0 578,865 - BT0467 0.89 +0.5 578,927 - +1.0 578,927 - -0.7 578,932 - -1.0 578,932 - +1.0 579,180 + BT0468 0.11 +1.6 579,334 - BT0468 0.24 -1.0 579,347 + BT0468 0.25 -2.0 579,503 - BT0468 0.38 +0.6 579,551 + BT0468 0.43 -0.0 579,577 - BT0468 0.45 -0.0 579,637 - BT0468 0.50 -2.3 579,639 - BT0468 0.50 -0.6 579,641 - BT0468 0.50 -1.6 580,026 - BT0468 0.83 -1.6
Or see this region's nucleotide sequence