Experiment: Biofilm in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1859 and ycf29 overlap by 12 nucleotides ycf29 and natB are separated by 157 nucleotides natB and Synpcc7942_1862 are separated by 159 nucleotides
Synpcc7942_1859: Synpcc7942_1859 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,927,733 to 1,930,486
_1859
Synpcc7942_1860: ycf29 - two component transcriptional regulator, LuxR family, at 1,930,475 to 1,931,182
ycf29
Synpcc7942_1861: natB - periplasmic binding protein of ABC transporter for natural amino acids, at 1,931,340 to 1,932,605
natB
Synpcc7942_1862: Synpcc7942_1862 - hypothetical protein, at 1,932,765 to 1,933,688
_1862
Position (kb) 1931
1932
1933 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1930.353 kb on + strand at 1930.418 kb on - strand at 1930.478 kb on + strand at 1931.194 kb on + strand at 1931.194 kb on + strand at 1931.196 kb on + strand at 1931.200 kb on - strand at 1931.202 kb on - strand at 1931.233 kb on - strand at 1931.241 kb on + strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.260 kb on - strand at 1931.279 kb on + strand at 1931.281 kb on - strand at 1931.287 kb on - strand at 1931.293 kb on - strand at 1931.298 kb on + strand at 1931.306 kb on - strand at 1931.320 kb on + strand at 1931.350 kb on - strand at 1931.350 kb on - strand at 1931.364 kb on - strand at 1931.364 kb on - strand at 1931.398 kb on + strand at 1931.407 kb on - strand at 1931.417 kb on - strand at 1931.464 kb on - strand at 1931.464 kb on - strand at 1931.484 kb on + strand, within natB at 1931.490 kb on + strand, within natB at 1931.491 kb on + strand, within natB at 1931.492 kb on - strand, within natB at 1931.492 kb on - strand, within natB at 1931.496 kb on + strand, within natB at 1931.497 kb on - strand, within natB at 1931.505 kb on - strand, within natB at 1931.536 kb on - strand, within natB at 1931.553 kb on + strand, within natB at 1931.553 kb on + strand, within natB at 1931.559 kb on - strand, within natB at 1931.570 kb on - strand, within natB at 1931.578 kb on + strand, within natB at 1931.591 kb on - strand at 1931.595 kb on + strand, within natB at 1931.602 kb on + strand, within natB at 1931.682 kb on - strand, within natB at 1931.717 kb on - strand, within natB at 1931.746 kb on - strand, within natB at 1931.748 kb on + strand, within natB at 1931.755 kb on + strand, within natB at 1931.756 kb on - strand, within natB at 1931.756 kb on - strand, within natB at 1931.761 kb on + strand, within natB at 1931.778 kb on - strand, within natB at 1931.788 kb on + strand, within natB at 1931.790 kb on + strand, within natB at 1931.790 kb on + strand, within natB at 1931.796 kb on - strand, within natB at 1931.798 kb on - strand, within natB at 1931.811 kb on + strand, within natB at 1931.825 kb on + strand, within natB at 1931.834 kb on - strand, within natB at 1931.840 kb on - strand, within natB at 1931.887 kb on + strand, within natB at 1931.899 kb on + strand, within natB at 1931.899 kb on + strand, within natB at 1931.932 kb on - strand, within natB at 1931.937 kb on + strand, within natB at 1931.945 kb on - strand, within natB at 1931.949 kb on + strand, within natB at 1931.951 kb on + strand, within natB at 1931.956 kb on + strand, within natB at 1931.959 kb on + strand, within natB at 1931.959 kb on - strand, within natB at 1931.961 kb on + strand, within natB at 1931.964 kb on - strand, within natB at 1931.967 kb on - strand, within natB at 1931.982 kb on + strand, within natB at 1931.990 kb on - strand, within natB at 1932.003 kb on - strand at 1932.005 kb on + strand at 1932.013 kb on - strand, within natB at 1932.035 kb on + strand, within natB at 1932.038 kb on - strand, within natB at 1932.066 kb on + strand, within natB at 1932.074 kb on - strand, within natB at 1932.085 kb on + strand, within natB at 1932.118 kb on - strand, within natB at 1932.118 kb on - strand, within natB at 1932.118 kb on - strand, within natB at 1932.123 kb on - strand, within natB at 1932.128 kb on + strand, within natB at 1932.132 kb on + strand, within natB at 1932.132 kb on + strand, within natB at 1932.191 kb on + strand, within natB at 1932.224 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.247 kb on - strand, within natB at 1932.254 kb on - strand, within natB at 1932.254 kb on - strand, within natB at 1932.255 kb on - strand, within natB at 1932.260 kb on - strand, within natB at 1932.271 kb on - strand, within natB at 1932.298 kb on - strand, within natB at 1932.307 kb on + strand, within natB at 1932.316 kb on + strand, within natB at 1932.329 kb on - strand, within natB at 1932.352 kb on + strand, within natB at 1932.382 kb on + strand, within natB at 1932.387 kb on + strand, within natB at 1932.387 kb on + strand, within natB at 1932.395 kb on - strand, within natB at 1932.395 kb on - strand, within natB at 1932.405 kb on + strand, within natB at 1932.405 kb on + strand, within natB at 1932.405 kb on + strand, within natB at 1932.423 kb on + strand, within natB at 1932.428 kb on + strand, within natB at 1932.428 kb on + strand, within natB at 1932.438 kb on + strand, within natB at 1932.446 kb on - strand, within natB at 1932.446 kb on - strand, within natB at 1932.446 kb on - strand, within natB at 1932.461 kb on - strand, within natB at 1932.496 kb on + strand at 1932.505 kb on - strand at 1932.514 kb on - strand at 1932.549 kb on + strand at 1932.557 kb on + strand at 1932.560 kb on + strand at 1932.560 kb on - strand at 1932.562 kb on + strand at 1932.570 kb on - strand at 1932.580 kb on - strand at 1932.580 kb on - strand at 1932.610 kb on - strand at 1932.611 kb on + strand at 1932.611 kb on + strand at 1932.619 kb on - strand at 1932.628 kb on + strand at 1932.644 kb on + strand at 1932.696 kb on + strand at 1932.696 kb on + strand at 1932.707 kb on + strand at 1932.707 kb on + strand at 1932.715 kb on - strand at 1932.719 kb on + strand at 1932.726 kb on + strand at 1932.727 kb on - strand at 1932.817 kb on - strand at 1932.835 kb on - strand at 1932.892 kb on - strand, within Synpcc7942_1862 at 1932.902 kb on - strand, within Synpcc7942_1862 at 1932.927 kb on - strand, within Synpcc7942_1862 at 1933.126 kb on + strand, within Synpcc7942_1862 at 1933.141 kb on - strand, within Synpcc7942_1862 at 1933.402 kb on - strand, within Synpcc7942_1862 at 1933.449 kb on + strand, within Synpcc7942_1862 at 1933.487 kb on + strand, within Synpcc7942_1862 at 1933.565 kb on + strand, within Synpcc7942_1862
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Test Tubes with Spin rep 1 remove 1,930,353 + -1.4 1,930,418 - +1.0 1,930,478 + -0.6 1,931,194 + -1.3 1,931,194 + -1.9 1,931,196 + -0.4 1,931,200 - -1.4 1,931,202 - -0.0 1,931,233 - -0.3 1,931,241 + +1.0 1,931,248 - -0.8 1,931,248 - -1.8 1,931,248 - +2.0 1,931,248 - -0.7 1,931,260 - +1.0 1,931,279 + -1.1 1,931,281 - -0.0 1,931,287 - -0.0 1,931,293 - -1.4 1,931,298 + -0.5 1,931,306 - +0.5 1,931,320 + -0.5 1,931,350 - -0.4 1,931,350 - -0.4 1,931,364 - +1.3 1,931,364 - -0.6 1,931,398 + -0.6 1,931,407 - -0.7 1,931,417 - +1.0 1,931,464 - +1.7 1,931,464 - -0.6 1,931,484 + natB Synpcc7942_1861 0.11 +0.4 1,931,490 + natB Synpcc7942_1861 0.12 -0.0 1,931,491 + natB Synpcc7942_1861 0.12 -0.7 1,931,492 - natB Synpcc7942_1861 0.12 -1.2 1,931,492 - natB Synpcc7942_1861 0.12 -1.4 1,931,496 + natB Synpcc7942_1861 0.12 +1.0 1,931,497 - natB Synpcc7942_1861 0.12 +2.6 1,931,505 - natB Synpcc7942_1861 0.13 +1.0 1,931,536 - natB Synpcc7942_1861 0.15 -0.1 1,931,553 + natB Synpcc7942_1861 0.17 -1.7 1,931,553 + natB Synpcc7942_1861 0.17 +1.0 1,931,559 - natB Synpcc7942_1861 0.17 -0.5 1,931,570 - natB Synpcc7942_1861 0.18 -1.7 1,931,578 + natB Synpcc7942_1861 0.19 +1.0 1,931,591 - -0.6 1,931,595 + natB Synpcc7942_1861 0.20 -0.6 1,931,602 + natB Synpcc7942_1861 0.21 -0.0 1,931,682 - natB Synpcc7942_1861 0.27 -0.8 1,931,717 - natB Synpcc7942_1861 0.30 -0.2 1,931,746 - natB Synpcc7942_1861 0.32 -0.9 1,931,748 + natB Synpcc7942_1861 0.32 -0.2 1,931,755 + natB Synpcc7942_1861 0.33 -1.2 1,931,756 - natB Synpcc7942_1861 0.33 +1.2 1,931,756 - natB Synpcc7942_1861 0.33 -0.0 1,931,761 + natB Synpcc7942_1861 0.33 -1.1 1,931,778 - natB Synpcc7942_1861 0.35 -0.9 1,931,788 + natB Synpcc7942_1861 0.35 -1.9 1,931,790 + natB Synpcc7942_1861 0.36 -1.1 1,931,790 + natB Synpcc7942_1861 0.36 +1.0 1,931,796 - natB Synpcc7942_1861 0.36 -1.0 1,931,798 - natB Synpcc7942_1861 0.36 -1.3 1,931,811 + natB Synpcc7942_1861 0.37 -0.0 1,931,825 + natB Synpcc7942_1861 0.38 -1.8 1,931,834 - natB Synpcc7942_1861 0.39 -1.6 1,931,840 - natB Synpcc7942_1861 0.39 -1.0 1,931,887 + natB Synpcc7942_1861 0.43 -0.0 1,931,899 + natB Synpcc7942_1861 0.44 +0.5 1,931,899 + natB Synpcc7942_1861 0.44 -0.6 1,931,932 - natB Synpcc7942_1861 0.47 +1.2 1,931,937 + natB Synpcc7942_1861 0.47 +1.0 1,931,945 - natB Synpcc7942_1861 0.48 -1.0 1,931,949 + natB Synpcc7942_1861 0.48 +1.7 1,931,951 + natB Synpcc7942_1861 0.48 -1.4 1,931,956 + natB Synpcc7942_1861 0.49 +0.4 1,931,959 + natB Synpcc7942_1861 0.49 -0.0 1,931,959 - natB Synpcc7942_1861 0.49 +0.4 1,931,961 + natB Synpcc7942_1861 0.49 -0.9 1,931,964 - natB Synpcc7942_1861 0.49 -0.8 1,931,967 - natB Synpcc7942_1861 0.50 -0.7 1,931,982 + natB Synpcc7942_1861 0.51 +1.0 1,931,990 - natB Synpcc7942_1861 0.51 +0.2 1,932,003 - -0.8 1,932,005 + -1.8 1,932,013 - natB Synpcc7942_1861 0.53 -2.3 1,932,035 + natB Synpcc7942_1861 0.55 +1.0 1,932,038 - natB Synpcc7942_1861 0.55 -0.3 1,932,066 + natB Synpcc7942_1861 0.57 -1.4 1,932,074 - natB Synpcc7942_1861 0.58 -1.0 1,932,085 + natB Synpcc7942_1861 0.59 -0.7 1,932,118 - natB Synpcc7942_1861 0.61 -1.3 1,932,118 - natB Synpcc7942_1861 0.61 -0.6 1,932,118 - natB Synpcc7942_1861 0.61 -1.0 1,932,123 - natB Synpcc7942_1861 0.62 -0.4 1,932,128 + natB Synpcc7942_1861 0.62 +0.7 1,932,132 + natB Synpcc7942_1861 0.63 -0.5 1,932,132 + natB Synpcc7942_1861 0.63 -0.5 1,932,191 + natB Synpcc7942_1861 0.67 -0.7 1,932,224 + natB Synpcc7942_1861 0.70 -1.1 1,932,231 + natB Synpcc7942_1861 0.70 -0.0 1,932,231 + natB Synpcc7942_1861 0.70 -0.5 1,932,231 + natB Synpcc7942_1861 0.70 -0.6 1,932,231 + natB Synpcc7942_1861 0.70 -0.9 1,932,246 + natB Synpcc7942_1861 0.72 +1.0 1,932,246 + natB Synpcc7942_1861 0.72 -1.1 1,932,246 + natB Synpcc7942_1861 0.72 +1.0 1,932,246 + natB Synpcc7942_1861 0.72 -1.9 1,932,246 + natB Synpcc7942_1861 0.72 +0.1 1,932,246 + natB Synpcc7942_1861 0.72 -1.9 1,932,246 + natB Synpcc7942_1861 0.72 -0.8 1,932,246 + natB Synpcc7942_1861 0.72 +1.0 1,932,247 - natB Synpcc7942_1861 0.72 -0.9 1,932,254 - natB Synpcc7942_1861 0.72 -0.5 1,932,254 - natB Synpcc7942_1861 0.72 -0.1 1,932,255 - natB Synpcc7942_1861 0.72 -1.0 1,932,260 - natB Synpcc7942_1861 0.73 -1.4 1,932,271 - natB Synpcc7942_1861 0.74 +0.7 1,932,298 - natB Synpcc7942_1861 0.76 +1.0 1,932,307 + natB Synpcc7942_1861 0.76 +1.5 1,932,316 + natB Synpcc7942_1861 0.77 +0.3 1,932,329 - natB Synpcc7942_1861 0.78 +1.0 1,932,352 + natB Synpcc7942_1861 0.80 +3.0 1,932,382 + natB Synpcc7942_1861 0.82 -2.1 1,932,387 + natB Synpcc7942_1861 0.83 -0.9 1,932,387 + natB Synpcc7942_1861 0.83 +1.4 1,932,395 - natB Synpcc7942_1861 0.83 -0.0 1,932,395 - natB Synpcc7942_1861 0.83 +0.3 1,932,405 + natB Synpcc7942_1861 0.84 -0.1 1,932,405 + natB Synpcc7942_1861 0.84 -0.9 1,932,405 + natB Synpcc7942_1861 0.84 -0.0 1,932,423 + natB Synpcc7942_1861 0.86 -1.6 1,932,428 + natB Synpcc7942_1861 0.86 +0.0 1,932,428 + natB Synpcc7942_1861 0.86 -0.8 1,932,438 + natB Synpcc7942_1861 0.87 +1.4 1,932,446 - natB Synpcc7942_1861 0.87 +0.3 1,932,446 - natB Synpcc7942_1861 0.87 -1.0 1,932,446 - natB Synpcc7942_1861 0.87 -0.4 1,932,461 - natB Synpcc7942_1861 0.89 -0.8 1,932,496 + +0.6 1,932,505 - -0.5 1,932,514 - +0.1 1,932,549 + -1.1 1,932,557 + -0.0 1,932,560 + +0.3 1,932,560 - +1.0 1,932,562 + -0.8 1,932,570 - -1.5 1,932,580 - -0.2 1,932,580 - +1.0 1,932,610 - -0.6 1,932,611 + +0.1 1,932,611 + -0.4 1,932,619 - -0.1 1,932,628 + +0.2 1,932,644 + -0.0 1,932,696 + +2.8 1,932,696 + +0.1 1,932,707 + +0.7 1,932,707 + +1.0 1,932,715 - +0.5 1,932,719 + -0.3 1,932,726 + -0.5 1,932,727 - +2.0 1,932,817 - +1.0 1,932,835 - +1.0 1,932,892 - Synpcc7942_1862 0.14 -1.0 1,932,902 - Synpcc7942_1862 0.15 -0.0 1,932,927 - Synpcc7942_1862 0.18 -0.0 1,933,126 + Synpcc7942_1862 0.39 +1.0 1,933,141 - Synpcc7942_1862 0.41 -0.6 1,933,402 - Synpcc7942_1862 0.69 +1.0 1,933,449 + Synpcc7942_1862 0.74 -0.0 1,933,487 + Synpcc7942_1862 0.78 +1.0 1,933,565 + Synpcc7942_1862 0.87 -0.0
Or see this region's nucleotide sequence