Experiment: Biofilm in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0734 and Synpcc7942_0735 are separated by 47 nucleotides Synpcc7942_0735 and Synpcc7942_0736 are separated by 5 nucleotides Synpcc7942_0736 and Synpcc7942_0737 overlap by 8 nucleotides Synpcc7942_0737 and Synpcc7942_0738 are separated by 333 nucleotides
Synpcc7942_0734: Synpcc7942_0734 - hypothetical protein, at 729,177 to 731,051
_0734
Synpcc7942_0735: Synpcc7942_0735 - hypothetical protein, at 731,099 to 731,428
_0735
Synpcc7942_0736: Synpcc7942_0736 - electron transfer protein, at 731,434 to 731,745
_0736
Synpcc7942_0737: Synpcc7942_0737 - hypothetical protein, at 731,738 to 732,376
_0737
Synpcc7942_0738: Synpcc7942_0738 - Phage baseplate assembly protein V, at 732,710 to 733,270
_0738
Position (kb) 731
732 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 730.444 kb on + strand, within Synpcc7942_0734 at 730.553 kb on + strand, within Synpcc7942_0734 at 730.555 kb on - strand, within Synpcc7942_0734 at 730.576 kb on + strand, within Synpcc7942_0734 at 730.578 kb on + strand at 730.581 kb on + strand, within Synpcc7942_0734 at 730.581 kb on + strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.591 kb on + strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.600 kb on + strand, within Synpcc7942_0734 at 730.608 kb on - strand, within Synpcc7942_0734 at 730.608 kb on - strand, within Synpcc7942_0734 at 730.625 kb on + strand, within Synpcc7942_0734 at 730.625 kb on - strand, within Synpcc7942_0734 at 730.629 kb on - strand at 730.633 kb on - strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.649 kb on - strand, within Synpcc7942_0734 at 730.659 kb on + strand, within Synpcc7942_0734 at 730.659 kb on - strand, within Synpcc7942_0734 at 730.677 kb on - strand, within Synpcc7942_0734 at 730.771 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.835 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.868 kb on - strand at 730.876 kb on + strand at 730.876 kb on + strand at 730.889 kb on + strand at 730.897 kb on - strand at 730.897 kb on - strand at 730.911 kb on + strand at 730.912 kb on - strand at 730.912 kb on - strand at 730.967 kb on + strand at 730.975 kb on - strand at 730.975 kb on - strand at 730.975 kb on - strand at 731.021 kb on - strand at 731.021 kb on - strand at 731.032 kb on + strand at 731.040 kb on - strand at 731.040 kb on - strand at 731.040 kb on - strand at 731.047 kb on + strand at 731.057 kb on + strand at 731.060 kb on - strand at 731.060 kb on - strand at 731.064 kb on + strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.076 kb on + strand at 731.076 kb on + strand at 731.084 kb on - strand at 731.084 kb on - strand at 731.135 kb on - strand, within Synpcc7942_0735 at 731.135 kb on - strand, within Synpcc7942_0735 at 731.170 kb on - strand, within Synpcc7942_0735 at 731.171 kb on + strand, within Synpcc7942_0735 at 731.174 kb on - strand, within Synpcc7942_0735 at 731.184 kb on - strand, within Synpcc7942_0735 at 731.222 kb on + strand, within Synpcc7942_0735 at 731.255 kb on + strand, within Synpcc7942_0735 at 731.260 kb on + strand, within Synpcc7942_0735 at 731.260 kb on + strand, within Synpcc7942_0735 at 731.297 kb on - strand, within Synpcc7942_0735 at 731.304 kb on - strand, within Synpcc7942_0735 at 731.305 kb on + strand, within Synpcc7942_0735 at 731.378 kb on + strand, within Synpcc7942_0735 at 731.382 kb on + strand, within Synpcc7942_0735 at 731.382 kb on + strand, within Synpcc7942_0735 at 731.396 kb on + strand at 731.405 kb on - strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.431 kb on - strand at 731.431 kb on - strand at 731.437 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.442 kb on + strand at 731.449 kb on - strand at 731.449 kb on - strand at 731.449 kb on - strand at 731.454 kb on - strand at 731.464 kb on - strand at 731.502 kb on + strand at 731.521 kb on + strand, within Synpcc7942_0736 at 731.532 kb on + strand, within Synpcc7942_0736 at 731.547 kb on + strand, within Synpcc7942_0736 at 731.549 kb on - strand, within Synpcc7942_0736 at 731.556 kb on + strand, within Synpcc7942_0736 at 731.556 kb on + strand, within Synpcc7942_0736 at 731.564 kb on - strand, within Synpcc7942_0736 at 731.582 kb on + strand, within Synpcc7942_0736 at 731.584 kb on + strand, within Synpcc7942_0736 at 731.590 kb on - strand, within Synpcc7942_0736 at 731.621 kb on + strand, within Synpcc7942_0736 at 731.621 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.646 kb on + strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.659 kb on - strand, within Synpcc7942_0736 at 731.692 kb on - strand, within Synpcc7942_0736 at 731.738 kb on - strand at 731.748 kb on - strand at 731.764 kb on - strand at 731.775 kb on + strand at 731.788 kb on + strand at 731.789 kb on + strand at 731.789 kb on + strand at 731.794 kb on - strand at 731.797 kb on - strand at 731.799 kb on + strand at 731.801 kb on + strand at 731.824 kb on - strand, within Synpcc7942_0737 at 731.824 kb on - strand, within Synpcc7942_0737 at 731.875 kb on - strand, within Synpcc7942_0737 at 731.875 kb on - strand, within Synpcc7942_0737 at 731.890 kb on + strand, within Synpcc7942_0737 at 731.890 kb on - strand, within Synpcc7942_0737 at 731.903 kb on - strand, within Synpcc7942_0737 at 731.908 kb on - strand, within Synpcc7942_0737 at 731.913 kb on - strand, within Synpcc7942_0737 at 731.929 kb on - strand, within Synpcc7942_0737 at 731.930 kb on - strand, within Synpcc7942_0737 at 731.972 kb on + strand, within Synpcc7942_0737 at 731.972 kb on + strand, within Synpcc7942_0737 at 731.975 kb on - strand, within Synpcc7942_0737 at 731.981 kb on + strand, within Synpcc7942_0737 at 731.999 kb on + strand, within Synpcc7942_0737 at 732.002 kb on - strand, within Synpcc7942_0737 at 732.007 kb on - strand, within Synpcc7942_0737 at 732.015 kb on - strand, within Synpcc7942_0737 at 732.043 kb on + strand, within Synpcc7942_0737 at 732.056 kb on + strand, within Synpcc7942_0737 at 732.064 kb on - strand, within Synpcc7942_0737 at 732.064 kb on - strand, within Synpcc7942_0737 at 732.066 kb on + strand, within Synpcc7942_0737 at 732.076 kb on - strand, within Synpcc7942_0737 at 732.101 kb on - strand, within Synpcc7942_0737 at 732.187 kb on + strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.200 kb on - strand, within Synpcc7942_0737 at 732.230 kb on - strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.259 kb on + strand, within Synpcc7942_0737 at 732.262 kb on - strand, within Synpcc7942_0737 at 732.262 kb on - strand, within Synpcc7942_0737 at 732.279 kb on + strand, within Synpcc7942_0737 at 732.295 kb on + strand, within Synpcc7942_0737 at 732.300 kb on + strand, within Synpcc7942_0737 at 732.303 kb on - strand, within Synpcc7942_0737 at 732.333 kb on + strand at 732.333 kb on + strand at 732.341 kb on - strand at 732.356 kb on + strand at 732.397 kb on + strand at 732.397 kb on + strand at 732.407 kb on + strand at 732.407 kb on + strand at 732.407 kb on + strand at 732.442 kb on + strand at 732.450 kb on - strand at 732.465 kb on - strand at 732.483 kb on + strand at 732.483 kb on + strand at 732.489 kb on - strand at 732.509 kb on + strand at 732.527 kb on - strand at 732.527 kb on - strand at 732.527 kb on - strand at 732.529 kb on - strand at 732.534 kb on - strand at 732.534 kb on - strand at 732.551 kb on - strand at 732.551 kb on - strand at 732.551 kb on - strand at 732.558 kb on - strand at 732.592 kb on + strand at 732.604 kb on + strand at 732.607 kb on - strand at 732.642 kb on - strand at 732.669 kb on + strand at 732.677 kb on + strand at 732.680 kb on - strand at 732.685 kb on + strand at 732.690 kb on + strand at 732.693 kb on - strand at 732.700 kb on + strand at 732.706 kb on + strand at 732.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Test Tubes with Spin rep 1 remove 730,444 + Synpcc7942_0734 0.68 -0.0 730,553 + Synpcc7942_0734 0.73 +1.0 730,555 - Synpcc7942_0734 0.73 +2.0 730,576 + Synpcc7942_0734 0.75 -0.6 730,578 + +1.0 730,581 + Synpcc7942_0734 0.75 +1.3 730,581 + Synpcc7942_0734 0.75 +1.0 730,584 - Synpcc7942_0734 0.75 -0.2 730,584 - Synpcc7942_0734 0.75 +1.0 730,584 - Synpcc7942_0734 0.75 -1.0 730,586 + Synpcc7942_0734 0.75 -0.5 730,586 + Synpcc7942_0734 0.75 -1.6 730,586 + Synpcc7942_0734 0.75 -0.4 730,586 + Synpcc7942_0734 0.75 +0.4 730,586 + Synpcc7942_0734 0.75 -1.2 730,586 + Synpcc7942_0734 0.75 -0.7 730,589 - Synpcc7942_0734 0.75 -1.2 730,589 - Synpcc7942_0734 0.75 -0.1 730,589 - Synpcc7942_0734 0.75 -0.6 730,589 - Synpcc7942_0734 0.75 -0.9 730,591 + Synpcc7942_0734 0.75 -0.6 730,594 - Synpcc7942_0734 0.76 -1.9 730,594 - Synpcc7942_0734 0.76 +0.2 730,594 - -0.0 730,594 - Synpcc7942_0734 0.76 -1.0 730,594 - Synpcc7942_0734 0.76 +1.0 730,594 - Synpcc7942_0734 0.76 -0.7 730,600 + Synpcc7942_0734 0.76 -0.6 730,608 - Synpcc7942_0734 0.76 -0.7 730,608 - Synpcc7942_0734 0.76 +1.0 730,625 + Synpcc7942_0734 0.77 -0.2 730,625 - Synpcc7942_0734 0.77 -1.1 730,629 - -1.0 730,633 - Synpcc7942_0734 0.78 -0.0 730,637 + Synpcc7942_0734 0.78 -0.2 730,637 + Synpcc7942_0734 0.78 -0.6 730,637 + Synpcc7942_0734 0.78 +0.4 730,649 - Synpcc7942_0734 0.79 -0.2 730,659 + Synpcc7942_0734 0.79 -1.6 730,659 - Synpcc7942_0734 0.79 +0.4 730,677 - Synpcc7942_0734 0.80 +1.0 730,771 - Synpcc7942_0734 0.85 -1.3 730,794 - Synpcc7942_0734 0.86 -0.3 730,794 - Synpcc7942_0734 0.86 +0.7 730,794 - Synpcc7942_0734 0.86 -0.1 730,835 + Synpcc7942_0734 0.88 -0.4 730,853 + Synpcc7942_0734 0.89 +2.6 730,853 + Synpcc7942_0734 0.89 -0.3 730,853 + Synpcc7942_0734 0.89 +0.7 730,861 - Synpcc7942_0734 0.90 +2.6 730,861 - Synpcc7942_0734 0.90 -0.5 730,861 - Synpcc7942_0734 0.90 -0.7 730,868 - -0.6 730,876 + -0.6 730,876 + +0.1 730,889 + -0.8 730,897 - -0.1 730,897 - +1.9 730,911 + -1.2 730,912 - -1.5 730,912 - -0.2 730,967 + -0.3 730,975 - -0.0 730,975 - -0.0 730,975 - -0.3 731,021 - +2.0 731,021 - +0.2 731,032 + -1.8 731,040 - +0.6 731,040 - -0.4 731,040 - -0.8 731,047 + -0.5 731,057 + +1.0 731,060 - +1.0 731,060 - -0.6 731,064 + +1.0 731,067 - -1.6 731,067 - -0.6 731,067 - -1.6 731,067 - +0.3 731,076 + -0.5 731,076 + +1.0 731,084 - -0.4 731,084 - -0.7 731,135 - Synpcc7942_0735 0.11 -0.5 731,135 - Synpcc7942_0735 0.11 -0.5 731,170 - Synpcc7942_0735 0.22 +0.5 731,171 + Synpcc7942_0735 0.22 +1.0 731,174 - Synpcc7942_0735 0.23 +1.6 731,184 - Synpcc7942_0735 0.26 -0.8 731,222 + Synpcc7942_0735 0.37 -0.3 731,255 + Synpcc7942_0735 0.47 -0.3 731,260 + Synpcc7942_0735 0.49 +0.6 731,260 + Synpcc7942_0735 0.49 +0.3 731,297 - Synpcc7942_0735 0.60 -0.1 731,304 - Synpcc7942_0735 0.62 -0.2 731,305 + Synpcc7942_0735 0.62 +1.1 731,378 + Synpcc7942_0735 0.85 -1.4 731,382 + Synpcc7942_0735 0.86 -0.0 731,382 + Synpcc7942_0735 0.86 +1.0 731,396 + +1.6 731,405 - +2.0 731,423 + -0.4 731,423 + -0.4 731,423 + +1.0 731,423 + -1.0 731,423 + -0.7 731,423 + -0.3 731,423 + +0.1 731,423 + -0.6 731,423 + +0.3 731,423 + -0.3 731,431 - -0.2 731,431 - +0.3 731,437 + -0.8 731,441 + -0.4 731,441 + -0.0 731,441 + -0.7 731,441 + +0.3 731,442 + -0.3 731,449 - +1.0 731,449 - +0.1 731,449 - -2.0 731,454 - +0.4 731,464 - -1.3 731,502 + -1.3 731,521 + Synpcc7942_0736 0.28 -0.5 731,532 + Synpcc7942_0736 0.31 +1.8 731,547 + Synpcc7942_0736 0.36 -1.1 731,549 - Synpcc7942_0736 0.37 -1.0 731,556 + Synpcc7942_0736 0.39 -0.0 731,556 + Synpcc7942_0736 0.39 +0.7 731,564 - Synpcc7942_0736 0.42 -0.7 731,582 + Synpcc7942_0736 0.47 -0.7 731,584 + Synpcc7942_0736 0.48 -0.3 731,590 - Synpcc7942_0736 0.50 +1.0 731,621 + Synpcc7942_0736 0.60 -1.7 731,621 + Synpcc7942_0736 0.60 -0.3 731,639 + Synpcc7942_0736 0.66 -0.9 731,639 + Synpcc7942_0736 0.66 -2.0 731,639 + Synpcc7942_0736 0.66 -0.3 731,646 + Synpcc7942_0736 0.68 -0.0 731,647 - Synpcc7942_0736 0.68 -0.7 731,647 - Synpcc7942_0736 0.68 +1.0 731,647 - Synpcc7942_0736 0.68 +1.0 731,647 - Synpcc7942_0736 0.68 -1.0 731,659 - Synpcc7942_0736 0.72 +1.6 731,692 - Synpcc7942_0736 0.83 -0.5 731,738 - +1.6 731,748 - -0.8 731,764 - -0.7 731,775 + -0.7 731,788 + +0.6 731,789 + +0.1 731,789 + -1.1 731,794 - -0.9 731,797 - -1.0 731,799 + -0.7 731,801 + +2.0 731,824 - Synpcc7942_0737 0.13 -0.8 731,824 - Synpcc7942_0737 0.13 +1.0 731,875 - Synpcc7942_0737 0.21 -0.0 731,875 - Synpcc7942_0737 0.21 +1.0 731,890 + Synpcc7942_0737 0.24 +0.9 731,890 - Synpcc7942_0737 0.24 +1.0 731,903 - Synpcc7942_0737 0.26 -1.4 731,908 - Synpcc7942_0737 0.27 -0.4 731,913 - Synpcc7942_0737 0.27 -0.3 731,929 - Synpcc7942_0737 0.30 -0.3 731,930 - Synpcc7942_0737 0.30 -0.3 731,972 + Synpcc7942_0737 0.37 -1.6 731,972 + Synpcc7942_0737 0.37 -1.3 731,975 - Synpcc7942_0737 0.37 -0.8 731,981 + Synpcc7942_0737 0.38 +0.3 731,999 + Synpcc7942_0737 0.41 +1.0 732,002 - Synpcc7942_0737 0.41 +2.0 732,007 - Synpcc7942_0737 0.42 -0.0 732,015 - Synpcc7942_0737 0.43 +3.0 732,043 + Synpcc7942_0737 0.48 +1.0 732,056 + Synpcc7942_0737 0.50 -1.3 732,064 - Synpcc7942_0737 0.51 +0.3 732,064 - Synpcc7942_0737 0.51 -0.6 732,066 + Synpcc7942_0737 0.51 -1.7 732,076 - Synpcc7942_0737 0.53 -1.9 732,101 - Synpcc7942_0737 0.57 -0.4 732,187 + Synpcc7942_0737 0.70 -1.8 732,195 - Synpcc7942_0737 0.72 -1.4 732,195 - Synpcc7942_0737 0.72 +0.7 732,195 - Synpcc7942_0737 0.72 -0.2 732,200 - Synpcc7942_0737 0.72 -0.7 732,230 - Synpcc7942_0737 0.77 +1.0 732,254 + Synpcc7942_0737 0.81 +0.6 732,254 + Synpcc7942_0737 0.81 -1.0 732,254 + Synpcc7942_0737 0.81 -0.2 732,259 + Synpcc7942_0737 0.82 -0.0 732,262 - Synpcc7942_0737 0.82 -1.6 732,262 - Synpcc7942_0737 0.82 -1.0 732,279 + Synpcc7942_0737 0.85 -0.5 732,295 + Synpcc7942_0737 0.87 -0.4 732,300 + Synpcc7942_0737 0.88 +1.0 732,303 - Synpcc7942_0737 0.88 +0.1 732,333 + +0.2 732,333 + -0.9 732,341 - +1.5 732,356 + +1.6 732,397 + -0.2 732,397 + -1.3 732,407 + -1.8 732,407 + +1.6 732,407 + -0.6 732,442 + -1.6 732,450 - -1.5 732,465 - -1.4 732,483 + -0.3 732,483 + -0.9 732,489 - -0.4 732,509 + +0.2 732,527 - +1.7 732,527 - -1.3 732,527 - -0.6 732,529 - -0.8 732,534 - -0.6 732,534 - +1.0 732,551 - +1.3 732,551 - -0.6 732,551 - -0.3 732,558 - -0.3 732,592 + +1.0 732,604 + -1.9 732,607 - -1.8 732,642 - -0.9 732,669 + -1.6 732,677 + +1.0 732,680 - -0.8 732,685 + +0.1 732,690 + -0.8 732,693 - +0.2 732,700 + +0.6 732,706 + -0.3 732,724 - -0.5
Or see this region's nucleotide sequence