Experiment: Biofilm in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt murZ and tRNA-Leu are separated by 46 nucleotides tRNA-Leu and Synpcc7942_0716 are separated by 133 nucleotides Synpcc7942_0716 and dcd are separated by 580 nucleotides
Synpcc7942_0715: murZ - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 709,992 to 711,179
murZ
Synpcc7942_R0040: tRNA-Leu - tRNA-Leu, at 711,226 to 711,312
tRNA-Leu
Synpcc7942_0716: Synpcc7942_0716 - hypothetical protein, at 711,446 to 712,546
_0716
Synpcc7942_0717: dcd - dCTP deaminase, at 713,127 to 713,651
dcd
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 711.164 kb on + strand at 711.200 kb on + strand at 711.208 kb on - strand at 711.208 kb on - strand at 711.382 kb on + strand at 711.383 kb on - strand at 711.385 kb on - strand at 711.397 kb on + strand at 711.397 kb on + strand at 711.402 kb on + strand at 711.422 kb on + strand at 711.428 kb on - strand at 711.440 kb on - strand at 711.463 kb on + strand at 711.474 kb on + strand at 711.482 kb on - strand at 711.487 kb on + strand at 711.487 kb on + strand at 711.487 kb on + strand at 711.513 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.534 kb on + strand at 711.542 kb on - strand at 711.542 kb on - strand at 711.542 kb on - strand at 711.576 kb on - strand, within Synpcc7942_0716 at 711.592 kb on + strand, within Synpcc7942_0716 at 711.592 kb on + strand, within Synpcc7942_0716 at 711.600 kb on - strand, within Synpcc7942_0716 at 711.615 kb on + strand, within Synpcc7942_0716 at 711.621 kb on - strand, within Synpcc7942_0716 at 711.629 kb on - strand, within Synpcc7942_0716 at 711.637 kb on + strand, within Synpcc7942_0716 at 711.637 kb on + strand, within Synpcc7942_0716 at 711.637 kb on + strand, within Synpcc7942_0716 at 711.643 kb on + strand, within Synpcc7942_0716 at 711.643 kb on + strand, within Synpcc7942_0716 at 711.643 kb on + strand, within Synpcc7942_0716 at 711.645 kb on - strand, within Synpcc7942_0716 at 711.651 kb on - strand, within Synpcc7942_0716 at 711.651 kb on - strand, within Synpcc7942_0716 at 711.663 kb on + strand, within Synpcc7942_0716 at 711.710 kb on + strand, within Synpcc7942_0716 at 711.788 kb on + strand, within Synpcc7942_0716 at 711.796 kb on - strand, within Synpcc7942_0716 at 711.796 kb on - strand, within Synpcc7942_0716 at 711.796 kb on - strand, within Synpcc7942_0716 at 711.796 kb on - strand, within Synpcc7942_0716 at 711.796 kb on - strand, within Synpcc7942_0716 at 711.814 kb on + strand, within Synpcc7942_0716 at 711.814 kb on + strand, within Synpcc7942_0716 at 711.822 kb on - strand, within Synpcc7942_0716 at 711.822 kb on - strand, within Synpcc7942_0716 at 711.822 kb on - strand, within Synpcc7942_0716 at 711.856 kb on + strand, within Synpcc7942_0716 at 711.861 kb on + strand, within Synpcc7942_0716 at 711.861 kb on + strand, within Synpcc7942_0716 at 711.866 kb on + strand, within Synpcc7942_0716 at 711.869 kb on - strand, within Synpcc7942_0716 at 711.875 kb on - strand, within Synpcc7942_0716 at 711.919 kb on - strand, within Synpcc7942_0716 at 711.984 kb on + strand, within Synpcc7942_0716 at 711.991 kb on + strand, within Synpcc7942_0716 at 712.008 kb on + strand, within Synpcc7942_0716 at 712.027 kb on + strand, within Synpcc7942_0716 at 712.034 kb on - strand, within Synpcc7942_0716 at 712.036 kb on - strand, within Synpcc7942_0716 at 712.044 kb on - strand, within Synpcc7942_0716 at 712.048 kb on + strand, within Synpcc7942_0716 at 712.053 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.063 kb on + strand, within Synpcc7942_0716 at 712.071 kb on - strand, within Synpcc7942_0716 at 712.071 kb on - strand, within Synpcc7942_0716 at 712.071 kb on - strand, within Synpcc7942_0716 at 712.071 kb on - strand, within Synpcc7942_0716 at 712.111 kb on + strand, within Synpcc7942_0716 at 712.112 kb on + strand, within Synpcc7942_0716 at 712.117 kb on + strand, within Synpcc7942_0716 at 712.151 kb on - strand, within Synpcc7942_0716 at 712.151 kb on - strand, within Synpcc7942_0716 at 712.154 kb on + strand, within Synpcc7942_0716 at 712.173 kb on + strand, within Synpcc7942_0716 at 712.180 kb on - strand, within Synpcc7942_0716 at 712.221 kb on - strand, within Synpcc7942_0716 at 712.228 kb on - strand, within Synpcc7942_0716 at 712.230 kb on - strand, within Synpcc7942_0716 at 712.242 kb on + strand, within Synpcc7942_0716 at 712.242 kb on + strand, within Synpcc7942_0716 at 712.242 kb on + strand, within Synpcc7942_0716 at 712.244 kb on + strand, within Synpcc7942_0716 at 712.249 kb on + strand, within Synpcc7942_0716 at 712.250 kb on - strand, within Synpcc7942_0716 at 712.252 kb on - strand, within Synpcc7942_0716 at 712.252 kb on - strand, within Synpcc7942_0716 at 712.267 kb on - strand, within Synpcc7942_0716 at 712.268 kb on + strand, within Synpcc7942_0716 at 712.275 kb on + strand, within Synpcc7942_0716 at 712.275 kb on + strand, within Synpcc7942_0716 at 712.283 kb on - strand, within Synpcc7942_0716 at 712.283 kb on - strand, within Synpcc7942_0716 at 712.285 kb on + strand, within Synpcc7942_0716 at 712.285 kb on + strand, within Synpcc7942_0716 at 712.330 kb on - strand, within Synpcc7942_0716 at 712.341 kb on + strand, within Synpcc7942_0716 at 712.368 kb on - strand, within Synpcc7942_0716 at 712.368 kb on - strand, within Synpcc7942_0716 at 712.376 kb on + strand, within Synpcc7942_0716 at 712.376 kb on + strand, within Synpcc7942_0716 at 712.384 kb on - strand, within Synpcc7942_0716 at 712.386 kb on - strand, within Synpcc7942_0716 at 712.396 kb on + strand, within Synpcc7942_0716 at 712.398 kb on + strand, within Synpcc7942_0716 at 712.398 kb on + strand, within Synpcc7942_0716 at 712.418 kb on - strand, within Synpcc7942_0716 at 712.464 kb on + strand at 712.464 kb on + strand at 712.471 kb on + strand at 712.472 kb on - strand at 712.475 kb on - strand at 712.477 kb on + strand at 712.514 kb on + strand at 712.514 kb on + strand at 712.514 kb on + strand at 712.514 kb on + strand at 712.514 kb on + strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.522 kb on - strand at 712.527 kb on - strand at 712.555 kb on - strand at 712.560 kb on + strand at 712.560 kb on + strand at 712.613 kb on - strand at 712.616 kb on + strand at 712.616 kb on + strand at 712.616 kb on + strand at 712.622 kb on + strand at 712.624 kb on - strand at 712.624 kb on - strand at 712.624 kb on - strand at 712.624 kb on - strand at 712.624 kb on - strand at 712.624 kb on - strand at 712.632 kb on - strand at 712.651 kb on + strand at 712.654 kb on + strand at 712.659 kb on + strand at 712.684 kb on + strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.743 kb on - strand at 712.750 kb on - strand at 712.750 kb on - strand at 712.819 kb on + strand at 712.883 kb on + strand at 712.887 kb on + strand at 712.895 kb on + strand at 712.930 kb on - strand at 712.949 kb on - strand at 712.973 kb on - strand at 712.996 kb on - strand at 713.020 kb on + strand at 713.043 kb on + strand at 713.054 kb on + strand at 713.062 kb on - strand at 713.064 kb on + strand at 713.067 kb on - strand at 713.097 kb on + strand at 713.098 kb on + strand at 713.104 kb on + strand at 713.112 kb on - strand at 713.114 kb on - strand at 713.125 kb on + strand at 713.133 kb on - strand at 713.159 kb on + strand at 713.159 kb on + strand at 713.163 kb on - strand at 713.163 kb on - strand at 713.167 kb on - strand at 713.191 kb on + strand, within dcd at 713.191 kb on + strand, within dcd at 713.199 kb on - strand, within dcd at 713.199 kb on - strand, within dcd at 713.202 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand at 713.259 kb on + strand, within dcd at 713.267 kb on - strand, within dcd at 713.294 kb on + strand, within dcd at 713.294 kb on + strand, within dcd at 713.301 kb on + strand, within dcd at 713.306 kb on + strand, within dcd at 713.306 kb on + strand, within dcd at 713.314 kb on - strand, within dcd at 713.322 kb on - strand, within dcd at 713.324 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.351 kb on + strand, within dcd at 713.376 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.437 kb on + strand, within dcd at 713.445 kb on - strand, within dcd at 713.447 kb on + strand, within dcd at 713.453 kb on - strand, within dcd at 713.456 kb on + strand, within dcd at 713.472 kb on - strand, within dcd at 713.473 kb on - strand, within dcd at 713.479 kb on + strand, within dcd at 713.489 kb on - strand, within dcd at 713.510 kb on + strand, within dcd at 713.510 kb on + strand, within dcd at 713.518 kb on - strand, within dcd at 713.518 kb on - strand, within dcd
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Test Tubes with Spin rep 1 remove 711,164 + +1.6 711,200 + +1.0 711,208 - -1.0 711,208 - -0.2 711,382 + -0.7 711,383 - +2.3 711,385 - -0.2 711,397 + +0.6 711,397 + -1.0 711,402 + +0.7 711,422 + -0.8 711,428 - -0.8 711,440 - +0.3 711,463 + -1.3 711,474 + -1.2 711,482 - -0.5 711,487 + -0.2 711,487 + -0.1 711,487 + -0.6 711,513 + -0.3 711,534 + +1.0 711,534 + +1.0 711,534 + -1.4 711,534 + -0.0 711,534 + -0.9 711,534 + -0.1 711,534 + -0.8 711,534 + +2.4 711,542 - +1.0 711,542 - -0.6 711,542 - -0.0 711,576 - Synpcc7942_0716 0.12 +0.4 711,592 + Synpcc7942_0716 0.13 -0.1 711,592 + Synpcc7942_0716 0.13 +0.4 711,600 - Synpcc7942_0716 0.14 -0.5 711,615 + Synpcc7942_0716 0.15 -0.2 711,621 - Synpcc7942_0716 0.16 -0.2 711,629 - Synpcc7942_0716 0.17 +1.0 711,637 + Synpcc7942_0716 0.17 -1.0 711,637 + Synpcc7942_0716 0.17 -0.7 711,637 + Synpcc7942_0716 0.17 -0.1 711,643 + Synpcc7942_0716 0.18 +1.2 711,643 + Synpcc7942_0716 0.18 -1.4 711,643 + Synpcc7942_0716 0.18 +0.5 711,645 - Synpcc7942_0716 0.18 -0.0 711,651 - Synpcc7942_0716 0.19 -0.7 711,651 - Synpcc7942_0716 0.19 +1.0 711,663 + Synpcc7942_0716 0.20 -0.6 711,710 + Synpcc7942_0716 0.24 -1.3 711,788 + Synpcc7942_0716 0.31 -0.3 711,796 - Synpcc7942_0716 0.32 +0.7 711,796 - Synpcc7942_0716 0.32 +1.0 711,796 - Synpcc7942_0716 0.32 -0.0 711,796 - Synpcc7942_0716 0.32 -1.6 711,796 - Synpcc7942_0716 0.32 +2.0 711,814 + Synpcc7942_0716 0.33 +1.6 711,814 + Synpcc7942_0716 0.33 +0.0 711,822 - Synpcc7942_0716 0.34 -0.7 711,822 - Synpcc7942_0716 0.34 -0.0 711,822 - Synpcc7942_0716 0.34 +1.0 711,856 + Synpcc7942_0716 0.37 -0.9 711,861 + Synpcc7942_0716 0.38 +1.0 711,861 + Synpcc7942_0716 0.38 +2.8 711,866 + Synpcc7942_0716 0.38 -0.4 711,869 - Synpcc7942_0716 0.38 -0.2 711,875 - Synpcc7942_0716 0.39 +1.0 711,919 - Synpcc7942_0716 0.43 -0.4 711,984 + Synpcc7942_0716 0.49 +0.4 711,991 + Synpcc7942_0716 0.50 -0.8 712,008 + Synpcc7942_0716 0.51 -1.3 712,027 + Synpcc7942_0716 0.53 -0.3 712,034 - Synpcc7942_0716 0.53 +0.6 712,036 - Synpcc7942_0716 0.54 -0.3 712,044 - Synpcc7942_0716 0.54 +0.6 712,048 + Synpcc7942_0716 0.55 -1.9 712,053 + Synpcc7942_0716 0.55 -1.9 712,063 + Synpcc7942_0716 0.56 +1.7 712,063 + Synpcc7942_0716 0.56 -0.0 712,063 + Synpcc7942_0716 0.56 +1.0 712,063 + Synpcc7942_0716 0.56 +1.0 712,063 + Synpcc7942_0716 0.56 -0.0 712,063 + Synpcc7942_0716 0.56 +0.5 712,063 + Synpcc7942_0716 0.56 +0.2 712,063 + Synpcc7942_0716 0.56 -0.5 712,071 - Synpcc7942_0716 0.57 +0.8 712,071 - Synpcc7942_0716 0.57 +0.4 712,071 - Synpcc7942_0716 0.57 +1.0 712,071 - Synpcc7942_0716 0.57 -1.5 712,111 + Synpcc7942_0716 0.60 -1.7 712,112 + Synpcc7942_0716 0.60 -2.6 712,117 + Synpcc7942_0716 0.61 +3.0 712,151 - Synpcc7942_0716 0.64 -1.6 712,151 - Synpcc7942_0716 0.64 -1.0 712,154 + Synpcc7942_0716 0.64 -0.2 712,173 + Synpcc7942_0716 0.66 -0.6 712,180 - Synpcc7942_0716 0.67 +0.1 712,221 - Synpcc7942_0716 0.70 -0.4 712,228 - Synpcc7942_0716 0.71 -0.4 712,230 - Synpcc7942_0716 0.71 +1.0 712,242 + Synpcc7942_0716 0.72 -0.6 712,242 + Synpcc7942_0716 0.72 +0.3 712,242 + Synpcc7942_0716 0.72 -0.2 712,244 + Synpcc7942_0716 0.72 -0.7 712,249 + Synpcc7942_0716 0.73 -0.3 712,250 - Synpcc7942_0716 0.73 +1.0 712,252 - Synpcc7942_0716 0.73 -1.3 712,252 - Synpcc7942_0716 0.73 -0.2 712,267 - Synpcc7942_0716 0.75 -0.3 712,268 + Synpcc7942_0716 0.75 -1.6 712,275 + Synpcc7942_0716 0.75 +1.0 712,275 + Synpcc7942_0716 0.75 +1.1 712,283 - Synpcc7942_0716 0.76 -2.6 712,283 - Synpcc7942_0716 0.76 +1.0 712,285 + Synpcc7942_0716 0.76 -0.0 712,285 + Synpcc7942_0716 0.76 +1.0 712,330 - Synpcc7942_0716 0.80 +0.5 712,341 + Synpcc7942_0716 0.81 -1.3 712,368 - Synpcc7942_0716 0.84 +0.4 712,368 - Synpcc7942_0716 0.84 -0.6 712,376 + Synpcc7942_0716 0.84 -1.5 712,376 + Synpcc7942_0716 0.84 -0.8 712,384 - Synpcc7942_0716 0.85 -0.2 712,386 - Synpcc7942_0716 0.85 +0.1 712,396 + Synpcc7942_0716 0.86 +0.8 712,398 + Synpcc7942_0716 0.86 +2.2 712,398 + Synpcc7942_0716 0.86 -1.3 712,418 - Synpcc7942_0716 0.88 -1.6 712,464 + -1.5 712,464 + -0.2 712,471 + -1.4 712,472 - -0.0 712,475 - -1.0 712,477 + -0.3 712,514 + -1.6 712,514 + -0.5 712,514 + +0.1 712,514 + +0.2 712,514 + -1.3 712,522 - -1.0 712,522 - -0.0 712,522 - -0.0 712,522 - -0.6 712,522 - +0.1 712,522 - -0.6 712,522 - +1.0 712,522 - -0.9 712,527 - +1.0 712,555 - -1.0 712,560 + +1.0 712,560 + +1.0 712,613 - +1.7 712,616 + -0.3 712,616 + -1.8 712,616 + +0.1 712,622 + +1.0 712,624 - +1.0 712,624 - +0.1 712,624 - -1.1 712,624 - -0.4 712,624 - +0.4 712,624 - +0.7 712,632 - -0.9 712,651 + -1.6 712,654 + +2.2 712,659 + -0.4 712,684 + +1.0 712,693 - +0.1 712,693 - +2.0 712,693 - +2.0 712,743 - -0.7 712,750 - +1.0 712,750 - +0.6 712,819 + +1.0 712,883 + -1.6 712,887 + -1.2 712,895 + -0.0 712,930 - -2.0 712,949 - +1.0 712,973 - -0.6 712,996 - -1.0 713,020 + +0.4 713,043 + -1.2 713,054 + -0.7 713,062 - -1.2 713,064 + -1.2 713,067 - +0.2 713,097 + -1.0 713,098 + -1.6 713,104 + -0.2 713,112 - -1.6 713,114 - -0.4 713,125 + -0.7 713,133 - -1.0 713,159 + -0.1 713,159 + -1.7 713,163 - +1.0 713,163 - -1.6 713,167 - +0.3 713,191 + dcd Synpcc7942_0717 0.12 +1.0 713,191 + dcd Synpcc7942_0717 0.12 +1.0 713,199 - dcd Synpcc7942_0717 0.14 -0.0 713,199 - dcd Synpcc7942_0717 0.14 -0.8 713,202 + dcd Synpcc7942_0717 0.14 -0.3 713,249 + dcd Synpcc7942_0717 0.23 +1.0 713,249 + dcd Synpcc7942_0717 0.23 -1.0 713,249 + dcd Synpcc7942_0717 0.23 -0.9 713,249 + -1.0 713,259 + dcd Synpcc7942_0717 0.25 +0.2 713,267 - dcd Synpcc7942_0717 0.27 -0.3 713,294 + dcd Synpcc7942_0717 0.32 -1.0 713,294 + dcd Synpcc7942_0717 0.32 -0.0 713,301 + dcd Synpcc7942_0717 0.33 -0.6 713,306 + dcd Synpcc7942_0717 0.34 +1.0 713,306 + dcd Synpcc7942_0717 0.34 -1.6 713,314 - dcd Synpcc7942_0717 0.36 -1.4 713,322 - dcd Synpcc7942_0717 0.37 +0.6 713,324 - dcd Synpcc7942_0717 0.38 -0.9 713,349 - dcd Synpcc7942_0717 0.42 +2.8 713,349 - dcd Synpcc7942_0717 0.42 -1.0 713,349 - dcd Synpcc7942_0717 0.42 +0.1 713,351 + dcd Synpcc7942_0717 0.43 -2.2 713,376 + dcd Synpcc7942_0717 0.47 +0.3 713,413 + dcd Synpcc7942_0717 0.54 -1.8 713,413 + dcd Synpcc7942_0717 0.54 +1.8 713,413 + dcd Synpcc7942_0717 0.54 -0.1 713,413 + dcd Synpcc7942_0717 0.54 -1.7 713,413 + dcd Synpcc7942_0717 0.54 -0.6 713,431 - dcd Synpcc7942_0717 0.58 -1.0 713,431 - dcd Synpcc7942_0717 0.58 -1.0 713,431 - dcd Synpcc7942_0717 0.58 -1.2 713,431 - dcd Synpcc7942_0717 0.58 -1.0 713,437 + dcd Synpcc7942_0717 0.59 -0.5 713,445 - dcd Synpcc7942_0717 0.61 -0.6 713,447 + dcd Synpcc7942_0717 0.61 -1.2 713,453 - dcd Synpcc7942_0717 0.62 -0.6 713,456 + dcd Synpcc7942_0717 0.63 -1.0 713,472 - dcd Synpcc7942_0717 0.66 -0.2 713,473 - dcd Synpcc7942_0717 0.66 -1.0 713,479 + dcd Synpcc7942_0717 0.67 -1.0 713,489 - dcd Synpcc7942_0717 0.69 -0.7 713,510 + dcd Synpcc7942_0717 0.73 +1.0 713,510 + dcd Synpcc7942_0717 0.73 -0.7 713,518 - dcd Synpcc7942_0717 0.74 +0.4 713,518 - dcd Synpcc7942_0717 0.74 -0.3
Or see this region's nucleotide sequence