Experiment: Biofilm in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0420 and Synpcc7942_0421 are separated by 31 nucleotides Synpcc7942_0421 and Synpcc7942_0422 are separated by 200 nucleotides Synpcc7942_0422 and Synpcc7942_0423 are separated by 106 nucleotides Synpcc7942_0423 and psbAI are separated by 258 nucleotides
Synpcc7942_0420: Synpcc7942_0420 - hypothetical protein, at 409,951 to 411,516
_0420
Synpcc7942_0421: Synpcc7942_0421 - hypothetical protein, at 411,548 to 411,946
_0421
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Synpcc7942_0423: Synpcc7942_0423 - hypothetical protein, at 413,396 to 413,614
_0423
Synpcc7942_0424: psbAI - photosystem q(b) protein, at 413,873 to 414,955
psbAI
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.272 kb on + strand, within Synpcc7942_0420 at 411.297 kb on - strand, within Synpcc7942_0420 at 411.332 kb on + strand, within Synpcc7942_0420 at 411.334 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.363 kb on - strand at 411.381 kb on + strand at 411.381 kb on + strand at 411.390 kb on + strand at 411.398 kb on - strand at 411.398 kb on - strand at 411.433 kb on + strand at 411.566 kb on - strand at 411.607 kb on + strand, within Synpcc7942_0421 at 411.614 kb on + strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.676 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.715 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.819 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.846 kb on - strand, within Synpcc7942_0421 at 411.902 kb on - strand, within Synpcc7942_0421 at 411.905 kb on + strand, within Synpcc7942_0421 at 411.946 kb on + strand at 411.953 kb on + strand at 411.953 kb on + strand at 411.982 kb on - strand at 411.990 kb on + strand at 411.998 kb on - strand at 411.998 kb on - strand at 412.009 kb on + strand at 412.009 kb on + strand at 412.015 kb on + strand at 412.023 kb on - strand at 412.046 kb on + strand at 412.052 kb on + strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.091 kb on + strand at 412.099 kb on - strand at 412.123 kb on + strand at 412.133 kb on + strand at 412.133 kb on + strand at 412.166 kb on - strand at 412.185 kb on + strand at 412.188 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.196 kb on - strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.223 kb on - strand at 412.239 kb on + strand at 412.239 kb on + strand at 412.247 kb on - strand at 412.294 kb on - strand, within Synpcc7942_0422 at 412.313 kb on - strand, within Synpcc7942_0422 at 412.422 kb on + strand, within Synpcc7942_0422 at 412.489 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.514 kb on + strand, within Synpcc7942_0422 at 412.522 kb on + strand, within Synpcc7942_0422 at 412.562 kb on + strand, within Synpcc7942_0422 at 412.567 kb on - strand, within Synpcc7942_0422 at 412.569 kb on + strand, within Synpcc7942_0422 at 412.576 kb on - strand, within Synpcc7942_0422 at 412.594 kb on + strand, within Synpcc7942_0422 at 412.647 kb on + strand, within Synpcc7942_0422 at 412.655 kb on + strand, within Synpcc7942_0422 at 412.702 kb on + strand, within Synpcc7942_0422 at 412.710 kb on + strand, within Synpcc7942_0422 at 412.740 kb on - strand at 412.750 kb on - strand, within Synpcc7942_0422 at 412.755 kb on - strand, within Synpcc7942_0422 at 412.761 kb on - strand, within Synpcc7942_0422 at 412.774 kb on - strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.790 kb on + strand, within Synpcc7942_0422 at 412.791 kb on - strand, within Synpcc7942_0422 at 412.791 kb on - strand, within Synpcc7942_0422 at 412.798 kb on - strand, within Synpcc7942_0422 at 412.798 kb on - strand, within Synpcc7942_0422 at 412.839 kb on - strand, within Synpcc7942_0422 at 412.860 kb on - strand, within Synpcc7942_0422 at 412.863 kb on - strand, within Synpcc7942_0422 at 412.893 kb on - strand, within Synpcc7942_0422 at 412.918 kb on - strand, within Synpcc7942_0422 at 412.945 kb on + strand, within Synpcc7942_0422 at 412.955 kb on + strand, within Synpcc7942_0422 at 412.963 kb on - strand, within Synpcc7942_0422 at 412.995 kb on + strand, within Synpcc7942_0422 at 413.027 kb on + strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.102 kb on - strand, within Synpcc7942_0422 at 413.103 kb on - strand, within Synpcc7942_0422 at 413.107 kb on - strand, within Synpcc7942_0422 at 413.109 kb on + strand, within Synpcc7942_0422 at 413.117 kb on - strand at 413.128 kb on + strand, within Synpcc7942_0422 at 413.136 kb on - strand, within Synpcc7942_0422 at 413.219 kb on + strand at 413.275 kb on - strand at 413.275 kb on - strand at 413.332 kb on - strand at 413.336 kb on + strand at 413.338 kb on + strand at 413.341 kb on - strand at 413.360 kb on - strand at 413.360 kb on - strand at 413.362 kb on + strand at 413.363 kb on - strand at 413.370 kb on - strand at 413.373 kb on + strand at 413.373 kb on + strand at 413.397 kb on + strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.423 kb on + strand, within Synpcc7942_0423 at 413.460 kb on + strand, within Synpcc7942_0423 at 413.479 kb on + strand, within Synpcc7942_0423 at 413.487 kb on - strand, within Synpcc7942_0423 at 413.506 kb on + strand, within Synpcc7942_0423 at 413.571 kb on + strand, within Synpcc7942_0423 at 413.611 kb on + strand at 413.624 kb on + strand at 413.624 kb on + strand at 413.632 kb on - strand at 413.659 kb on - strand at 413.682 kb on + strand at 413.684 kb on + strand at 413.690 kb on - strand at 413.692 kb on + strand at 413.692 kb on + strand at 413.700 kb on - strand at 413.700 kb on - strand at 413.995 kb on + strand at 414.065 kb on - strand, within psbAI at 414.068 kb on + strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.190 kb on + strand, within psbAI at 414.283 kb on + strand, within psbAI
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Test Tubes with Spin rep 1 remove 411,243 + Synpcc7942_0420 0.83 +1.6 411,243 + Synpcc7942_0420 0.83 +2.0 411,243 + Synpcc7942_0420 0.83 -0.7 411,251 - Synpcc7942_0420 0.83 -1.3 411,251 - Synpcc7942_0420 0.83 +1.0 411,272 + Synpcc7942_0420 0.84 -1.6 411,297 - Synpcc7942_0420 0.86 +1.0 411,332 + Synpcc7942_0420 0.88 +0.6 411,334 + Synpcc7942_0420 0.88 +0.4 411,350 + Synpcc7942_0420 0.89 -0.4 411,350 + Synpcc7942_0420 0.89 -0.5 411,350 + Synpcc7942_0420 0.89 -0.0 411,363 - -0.6 411,381 + -0.2 411,381 + -0.2 411,390 + +0.2 411,398 - -2.6 411,398 - -0.6 411,433 + +1.0 411,566 - -1.4 411,607 + Synpcc7942_0421 0.15 -0.6 411,614 + Synpcc7942_0421 0.17 +1.0 411,622 - Synpcc7942_0421 0.19 +2.6 411,622 - Synpcc7942_0421 0.19 -1.3 411,676 - Synpcc7942_0421 0.32 +0.3 411,682 - Synpcc7942_0421 0.34 -0.7 411,682 - Synpcc7942_0421 0.34 -0.0 411,682 - Synpcc7942_0421 0.34 -0.6 411,682 - Synpcc7942_0421 0.34 -1.5 411,715 - Synpcc7942_0421 0.42 -0.0 411,742 - Synpcc7942_0421 0.49 -1.8 411,742 - Synpcc7942_0421 0.49 -0.9 411,804 + Synpcc7942_0421 0.64 +1.0 411,804 + Synpcc7942_0421 0.64 -0.0 411,804 + Synpcc7942_0421 0.64 +1.0 411,812 - Synpcc7942_0421 0.66 -1.0 411,812 - Synpcc7942_0421 0.66 -0.0 411,812 - Synpcc7942_0421 0.66 +0.1 411,819 + Synpcc7942_0421 0.68 -0.2 411,831 + Synpcc7942_0421 0.71 -2.6 411,831 + Synpcc7942_0421 0.71 +1.0 411,839 - Synpcc7942_0421 0.73 -0.5 411,839 - Synpcc7942_0421 0.73 -0.0 411,846 - Synpcc7942_0421 0.75 -0.4 411,902 - Synpcc7942_0421 0.89 -1.3 411,905 + Synpcc7942_0421 0.89 +1.0 411,946 + -1.4 411,953 + +0.1 411,953 + +0.2 411,982 - -0.3 411,990 + +0.1 411,998 - -0.8 411,998 - +0.2 412,009 + +1.0 412,009 + -1.8 412,015 + +1.2 412,023 - +0.5 412,046 + -0.0 412,052 + -0.7 412,065 - -1.2 412,065 - +0.6 412,065 - -1.3 412,065 - -0.9 412,065 - +1.0 412,091 + -0.4 412,099 - +1.0 412,123 + -0.5 412,133 + -0.5 412,133 + +0.4 412,166 - -0.8 412,185 + -1.1 412,188 - +0.4 412,193 - -0.0 412,193 - -0.1 412,193 - -0.3 412,196 - -0.9 412,207 + -1.2 412,207 + -0.5 412,207 + -0.7 412,215 + -0.6 412,215 + +2.2 412,215 + +1.0 412,223 - -1.7 412,239 + +0.6 412,239 + +1.0 412,247 - -0.5 412,294 - Synpcc7942_0422 0.13 -0.6 412,313 - Synpcc7942_0422 0.15 -0.7 412,422 + Synpcc7942_0422 0.24 +1.0 412,489 + Synpcc7942_0422 0.30 +0.2 412,499 + Synpcc7942_0422 0.31 +0.7 412,499 + Synpcc7942_0422 0.31 +1.3 412,507 - Synpcc7942_0422 0.31 -1.5 412,507 - Synpcc7942_0422 0.31 +0.2 412,507 - Synpcc7942_0422 0.31 +1.3 412,514 + Synpcc7942_0422 0.32 -0.6 412,522 + Synpcc7942_0422 0.33 -0.6 412,562 + Synpcc7942_0422 0.36 +0.4 412,567 - Synpcc7942_0422 0.37 -0.3 412,569 + Synpcc7942_0422 0.37 -0.2 412,576 - Synpcc7942_0422 0.38 +1.1 412,594 + Synpcc7942_0422 0.39 -0.6 412,647 + Synpcc7942_0422 0.44 -1.0 412,655 + Synpcc7942_0422 0.44 -0.7 412,702 + Synpcc7942_0422 0.49 +1.1 412,710 + Synpcc7942_0422 0.49 -0.7 412,740 - -1.3 412,750 - Synpcc7942_0422 0.53 -0.1 412,755 - Synpcc7942_0422 0.53 -0.1 412,761 - Synpcc7942_0422 0.54 -0.8 412,774 - Synpcc7942_0422 0.55 +2.6 412,790 + Synpcc7942_0422 0.56 +2.0 412,790 + Synpcc7942_0422 0.56 -1.5 412,790 + Synpcc7942_0422 0.56 -0.6 412,790 + Synpcc7942_0422 0.56 -1.3 412,791 - Synpcc7942_0422 0.56 -1.0 412,791 - Synpcc7942_0422 0.56 +0.3 412,798 - Synpcc7942_0422 0.57 -0.0 412,798 - Synpcc7942_0422 0.57 +0.6 412,839 - Synpcc7942_0422 0.61 +0.9 412,860 - Synpcc7942_0422 0.62 +0.6 412,863 - Synpcc7942_0422 0.63 +0.4 412,893 - Synpcc7942_0422 0.65 +2.6 412,918 - Synpcc7942_0422 0.67 +1.4 412,945 + Synpcc7942_0422 0.70 +1.6 412,955 + Synpcc7942_0422 0.71 -2.3 412,963 - Synpcc7942_0422 0.71 -0.1 412,995 + Synpcc7942_0422 0.74 -0.3 413,027 + Synpcc7942_0422 0.77 -0.6 413,049 - Synpcc7942_0422 0.79 +3.0 413,049 - Synpcc7942_0422 0.79 +1.0 413,095 + Synpcc7942_0422 0.83 -0.0 413,095 + Synpcc7942_0422 0.83 -1.8 413,095 + Synpcc7942_0422 0.83 -1.1 413,095 + Synpcc7942_0422 0.83 -0.2 413,102 - Synpcc7942_0422 0.84 -0.4 413,103 - Synpcc7942_0422 0.84 +0.1 413,107 - Synpcc7942_0422 0.84 +1.0 413,109 + Synpcc7942_0422 0.84 +0.8 413,117 - -0.7 413,128 + Synpcc7942_0422 0.86 -0.8 413,136 - Synpcc7942_0422 0.87 -0.8 413,219 + -0.0 413,275 - -1.2 413,275 - -0.5 413,332 - -1.6 413,336 + -0.6 413,338 + -0.1 413,341 - +0.3 413,360 - -1.4 413,360 - -0.3 413,362 + -0.8 413,363 - +0.5 413,370 - +1.0 413,373 + +0.2 413,373 + -0.8 413,397 + -0.0 413,400 - -0.0 413,400 - +1.4 413,400 - -0.1 413,423 + Synpcc7942_0423 0.12 +1.1 413,460 + Synpcc7942_0423 0.29 -1.0 413,479 + Synpcc7942_0423 0.38 -0.4 413,487 - Synpcc7942_0423 0.42 -0.2 413,506 + Synpcc7942_0423 0.50 +0.6 413,571 + Synpcc7942_0423 0.80 +1.2 413,611 + -0.7 413,624 + +1.0 413,624 + -1.7 413,632 - -0.5 413,659 - -0.0 413,682 + +1.0 413,684 + +2.0 413,690 - -1.2 413,692 + -0.1 413,692 + -0.2 413,700 - -0.8 413,700 - +0.1 413,995 + +1.6 414,065 - psbAI Synpcc7942_0424 0.18 +1.0 414,068 + psbAI Synpcc7942_0424 0.18 -0.6 414,089 - psbAI Synpcc7942_0424 0.20 -0.8 414,089 - psbAI Synpcc7942_0424 0.20 +1.0 414,190 + psbAI Synpcc7942_0424 0.29 -0.1 414,283 + psbAI Synpcc7942_0424 0.38 -1.0
Or see this region's nucleotide sequence