Experiment: KB with Physcion 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4403 and Psyr_4404 are separated by 316 nucleotides Psyr_4404 and Psyr_4405 overlap by 4 nucleotides Psyr_4405 and Psyr_4406 are separated by 68 nucleotides
Psyr_4403: Psyr_4403 - conserved hypothetical protein, at 5,264,668 to 5,265,990
_4403
Psyr_4404: Psyr_4404 - tRNA-U20-dihydrouridine synthase, at 5,266,307 to 5,267,320
_4404
Psyr_4405: Psyr_4405 - DNA-binding protein Fis, at 5,267,317 to 5,267,637
_4405
Psyr_4406: Psyr_4406 - IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase, at 5,267,706 to 5,269,322
_4406
Position (kb) 5266
5267
5268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5265.480 kb on - strand, within Psyr_4403 at 5265.545 kb on + strand, within Psyr_4403 at 5265.546 kb on - strand at 5265.546 kb on - strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5266.049 kb on + strand at 5266.049 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.306 kb on + strand at 5266.306 kb on + strand at 5266.306 kb on + strand at 5266.331 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.716 kb on + strand, within Psyr_4404 at 5266.977 kb on + strand, within Psyr_4404 at 5267.025 kb on + strand, within Psyr_4404 at 5267.025 kb on + strand, within Psyr_4404 at 5267.025 kb on + strand, within Psyr_4404 at 5267.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Physcion 10 mM remove 5,265,480 - Psyr_4403 0.61 -0.1 5,265,545 + Psyr_4403 0.66 +0.6 5,265,546 - -1.4 5,265,546 - Psyr_4403 0.66 -0.4 5,265,574 + Psyr_4403 0.68 -0.1 5,265,574 + Psyr_4403 0.68 +1.6 5,265,574 + Psyr_4403 0.68 +0.6 5,265,574 + Psyr_4403 0.68 -1.6 5,265,575 - Psyr_4403 0.69 +1.9 5,265,575 - Psyr_4403 0.69 +1.3 5,265,575 - Psyr_4403 0.69 -1.3 5,265,575 - Psyr_4403 0.69 +0.5 5,265,760 + Psyr_4403 0.83 -1.6 5,265,760 + Psyr_4403 0.83 +1.2 5,265,760 + Psyr_4403 0.83 -0.3 5,265,961 + +0.2 5,265,961 + +0.1 5,265,961 + -0.3 5,265,961 + -0.4 5,265,961 + +1.6 5,265,961 + +0.4 5,265,961 + +0.2 5,265,962 - -0.1 5,265,962 - -2.3 5,265,962 - -0.9 5,265,962 - +0.1 5,265,962 - +1.1 5,266,049 + +1.1 5,266,049 + -0.9 5,266,300 + +0.3 5,266,300 + +1.9 5,266,300 + -2.9 5,266,300 + -0.6 5,266,306 + -0.0 5,266,306 + -0.4 5,266,306 + +0.5 5,266,331 + +0.1 5,266,333 + -0.3 5,266,333 + -0.9 5,266,333 + -0.8 5,266,333 + -0.1 5,266,333 + -1.9 5,266,333 + -0.4 5,266,333 + +0.0 5,266,333 + -1.4 5,266,333 + +0.6 5,266,333 + +0.4 5,266,333 + +0.6 5,266,333 + +0.5 5,266,333 + +0.7 5,266,333 + -0.4 5,266,333 + -0.5 5,266,333 + -1.9 5,266,333 + -0.1 5,266,333 + -1.4 5,266,333 + -0.8 5,266,333 + +0.1 5,266,333 + +0.8 5,266,333 + -0.5 5,266,333 + -0.5 5,266,333 + -0.5 5,266,333 + +0.3 5,266,333 + -1.4 5,266,333 + -1.2 5,266,333 + +2.1 5,266,333 + -0.3 5,266,333 + +0.3 5,266,333 + -0.5 5,266,333 + +0.8 5,266,333 + -0.1 5,266,333 + +0.1 5,266,333 + +0.2 5,266,716 + Psyr_4404 0.40 -1.4 5,266,977 + Psyr_4404 0.66 -1.1 5,267,025 + Psyr_4404 0.71 -2.0 5,267,025 + Psyr_4404 0.71 -0.5 5,267,025 + Psyr_4404 0.71 -0.2 5,267,339 + -0.3
Or see this region's nucleotide sequence