Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3122

Experiment: KB with Physcion 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3120 and Psyr_3121 are separated by 152 nucleotidesPsyr_3121 and Psyr_3122 are separated by 42 nucleotidesPsyr_3122 and Psyr_3123 are separated by 421 nucleotides Psyr_3120: Psyr_3120 - D-glucarate dehydratase, at 3,740,656 to 3,742,008 _3120 Psyr_3121: Psyr_3121 - Protein of unknown function DUF1345, at 3,742,161 to 3,742,814 _3121 Psyr_3122: Psyr_3122 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 3,742,857 to 3,743,813 _3122 Psyr_3123: Psyr_3123 - type III effector HopAH2, at 3,744,235 to 3,745,377 _3123 Position (kb) 3742 3743 3744Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3741.907 kb on + strandat 3741.907 kb on + strandat 3741.908 kb on - strandat 3741.908 kb on - strandat 3742.104 kb on + strandat 3742.105 kb on - strandat 3742.105 kb on - strandat 3742.126 kb on + strandat 3742.127 kb on - strandat 3742.127 kb on - strandat 3742.127 kb on - strandat 3742.298 kb on - strand, within Psyr_3121at 3742.578 kb on + strand, within Psyr_3121at 3742.579 kb on - strand, within Psyr_3121at 3742.579 kb on - strand, within Psyr_3121at 3742.638 kb on + strand, within Psyr_3121at 3742.654 kb on - strand, within Psyr_3121at 3742.912 kb on + strandat 3742.913 kb on - strandat 3742.965 kb on + strand, within Psyr_3122at 3742.976 kb on + strand, within Psyr_3122at 3742.977 kb on - strand, within Psyr_3122at 3742.977 kb on - strand, within Psyr_3122at 3743.169 kb on + strand, within Psyr_3122at 3743.169 kb on + strand, within Psyr_3122at 3743.169 kb on + strand, within Psyr_3122at 3743.169 kb on + strand, within Psyr_3122at 3743.169 kb on + strandat 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.170 kb on - strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.171 kb on + strand, within Psyr_3122at 3743.172 kb on - strand, within Psyr_3122at 3743.172 kb on - strand, within Psyr_3122at 3743.330 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.427 kb on + strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.428 kb on - strand, within Psyr_3122at 3743.548 kb on - strand, within Psyr_3122at 3743.719 kb on - strandat 3743.841 kb on + strandat 3743.841 kb on + strandat 3743.841 kb on + strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.842 kb on - strandat 3743.885 kb on - strandat 3743.974 kb on - strandat 3744.010 kb on + strandat 3744.010 kb on + strandat 3744.010 kb on + strandat 3744.010 kb on + strandat 3744.010 kb on + strandat 3744.011 kb on - strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.049 kb on + strandat 3744.050 kb on - strandat 3744.050 kb on - strandat 3744.050 kb on - strandat 3744.050 kb on - strandat 3744.077 kb on - strandat 3744.077 kb on - strandat 3744.117 kb on + strandat 3744.134 kb on + strandat 3744.134 kb on + strandat 3744.135 kb on - strandat 3744.135 kb on - strandat 3744.135 kb on - strandat 3744.135 kb on - strandat 3744.136 kb on + strandat 3744.136 kb on + strandat 3744.136 kb on + strandat 3744.136 kb on + strandat 3744.137 kb on - strandat 3744.160 kb on + strandat 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.373 kb on + strand, within Psyr_3123at 3744.374 kb on - strand, within Psyr_3123at 3744.374 kb on - strand, within Psyr_3123at 3744.374 kb on - strand, within Psyr_3123at 3744.374 kb on - strand, within Psyr_3123at 3744.374 kb on - strand, within Psyr_3123at 3744.424 kb on + strand, within Psyr_3123at 3744.424 kb on + strand, within Psyr_3123at 3744.424 kb on + strand, within Psyr_3123at 3744.425 kb on - strand, within Psyr_3123at 3744.425 kb on - strand, within Psyr_3123at 3744.426 kb on + strand, within Psyr_3123at 3744.489 kb on + strand, within Psyr_3123at 3744.490 kb on - strand, within Psyr_3123at 3744.490 kb on - strand, within Psyr_3123at 3744.741 kb on - strand, within Psyr_3123at 3744.741 kb on - strand, within Psyr_3123

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Physcion 10 mM
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3,741,907 + +0.6
3,741,907 + +0.5
3,741,908 - +0.2
3,741,908 - -0.6
3,742,104 + -2.5
3,742,105 - +0.3
3,742,105 - +0.4
3,742,126 + -1.4
3,742,127 - +1.0
3,742,127 - +0.4
3,742,127 - -0.4
3,742,298 - Psyr_3121 0.21 +3.2
3,742,578 + Psyr_3121 0.64 +0.1
3,742,579 - Psyr_3121 0.64 +1.7
3,742,579 - Psyr_3121 0.64 +0.1
3,742,638 + Psyr_3121 0.73 +1.3
3,742,654 - Psyr_3121 0.75 -0.4
3,742,912 + +0.1
3,742,913 - +0.9
3,742,965 + Psyr_3122 0.11 +1.0
3,742,976 + Psyr_3122 0.12 +1.0
3,742,977 - Psyr_3122 0.13 +0.6
3,742,977 - Psyr_3122 0.13 +1.5
3,743,169 + Psyr_3122 0.33 -0.1
3,743,169 + Psyr_3122 0.33 -0.4
3,743,169 + Psyr_3122 0.33 +0.8
3,743,169 + Psyr_3122 0.33 +0.3
3,743,169 + +0.1
3,743,170 - Psyr_3122 0.33 +0.2
3,743,170 - Psyr_3122 0.33 -0.1
3,743,170 - Psyr_3122 0.33 +0.6
3,743,170 - Psyr_3122 0.33 -0.9
3,743,170 - Psyr_3122 0.33 -0.5
3,743,170 - Psyr_3122 0.33 +0.3
3,743,170 - Psyr_3122 0.33 -0.9
3,743,170 - Psyr_3122 0.33 +0.3
3,743,171 + Psyr_3122 0.33 +0.5
3,743,171 + Psyr_3122 0.33 +0.8
3,743,171 + Psyr_3122 0.33 +0.8
3,743,171 + Psyr_3122 0.33 -0.1
3,743,171 + Psyr_3122 0.33 +1.8
3,743,171 + Psyr_3122 0.33 +1.1
3,743,172 - Psyr_3122 0.33 +3.3
3,743,172 - Psyr_3122 0.33 +0.7
3,743,330 + Psyr_3122 0.49 -0.7
3,743,427 + Psyr_3122 0.60 +0.0
3,743,427 + Psyr_3122 0.60 -0.1
3,743,427 + Psyr_3122 0.60 +0.5
3,743,427 + Psyr_3122 0.60 +2.7
3,743,427 + Psyr_3122 0.60 +0.0
3,743,427 + Psyr_3122 0.60 +0.6
3,743,427 + Psyr_3122 0.60 +0.0
3,743,427 + Psyr_3122 0.60 +0.7
3,743,427 + Psyr_3122 0.60 +0.9
3,743,427 + Psyr_3122 0.60 +1.1
3,743,427 + Psyr_3122 0.60 -0.5
3,743,428 - Psyr_3122 0.60 -1.6
3,743,428 - Psyr_3122 0.60 -0.0
3,743,428 - Psyr_3122 0.60 +3.3
3,743,428 - Psyr_3122 0.60 +0.1
3,743,428 - Psyr_3122 0.60 -0.8
3,743,428 - Psyr_3122 0.60 +0.3
3,743,428 - Psyr_3122 0.60 +0.7
3,743,428 - Psyr_3122 0.60 -0.9
3,743,428 - Psyr_3122 0.60 -0.1
3,743,428 - Psyr_3122 0.60 +1.5
3,743,428 - Psyr_3122 0.60 +0.2
3,743,428 - Psyr_3122 0.60 -0.5
3,743,428 - Psyr_3122 0.60 +0.5
3,743,548 - Psyr_3122 0.72 +2.3
3,743,719 - -0.1
3,743,841 + +0.1
3,743,841 + -0.3
3,743,841 + +0.3
3,743,842 - -0.6
3,743,842 - -1.1
3,743,842 - -0.5
3,743,842 - -0.6
3,743,842 - -0.7
3,743,842 - +0.3
3,743,842 - -0.1
3,743,885 - -0.5
3,743,974 - -1.1
3,744,010 + -0.7
3,744,010 + +0.1
3,744,010 + -1.3
3,744,010 + -0.7
3,744,010 + -0.7
3,744,011 - -0.4
3,744,049 + -0.7
3,744,049 + -0.5
3,744,049 + +0.6
3,744,049 + -0.6
3,744,049 + -1.3
3,744,049 + -1.4
3,744,049 + -0.9
3,744,050 - -0.3
3,744,050 - +0.5
3,744,050 - +0.7
3,744,050 - -0.3
3,744,077 - -0.7
3,744,077 - -1.1
3,744,117 + +0.1
3,744,134 + +0.9
3,744,134 + -1.0
3,744,135 - -0.3
3,744,135 - -0.1
3,744,135 - +0.1
3,744,135 - -0.1
3,744,136 + -0.3
3,744,136 + +0.8
3,744,136 + +1.7
3,744,136 + -0.1
3,744,137 - +2.0
3,744,160 + -0.9
3,744,373 + Psyr_3123 0.12 +0.9
3,744,373 + Psyr_3123 0.12 -0.4
3,744,373 + Psyr_3123 0.12 +0.1
3,744,373 + Psyr_3123 0.12 +0.4
3,744,373 + Psyr_3123 0.12 +0.7
3,744,373 + Psyr_3123 0.12 +2.3
3,744,373 + Psyr_3123 0.12 -1.1
3,744,374 - Psyr_3123 0.12 +1.7
3,744,374 - Psyr_3123 0.12 -0.0
3,744,374 - Psyr_3123 0.12 +0.7
3,744,374 - Psyr_3123 0.12 -0.7
3,744,374 - Psyr_3123 0.12 +0.7
3,744,424 + Psyr_3123 0.17 -1.2
3,744,424 + Psyr_3123 0.17 -0.2
3,744,424 + Psyr_3123 0.17 +1.3
3,744,425 - Psyr_3123 0.17 +1.7
3,744,425 - Psyr_3123 0.17 -0.8
3,744,426 + Psyr_3123 0.17 -0.0
3,744,489 + Psyr_3123 0.22 +0.2
3,744,490 - Psyr_3123 0.22 +2.2
3,744,490 - Psyr_3123 0.22 +1.8
3,744,741 - Psyr_3123 0.44 +0.4
3,744,741 - Psyr_3123 0.44 -0.4

Or see this region's nucleotide sequence