Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2217

Experiment: KB with Physcion 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2215 and Psyr_2216 are separated by 64 nucleotidesPsyr_2216 and Psyr_2217 are separated by 87 nucleotidesPsyr_2217 and Psyr_2218 are separated by 123 nucleotides Psyr_2215: Psyr_2215 - CheW-like protein, at 2,575,434 to 2,576,912 _2215 Psyr_2216: Psyr_2216 - conserved hypothetical protein, at 2,576,977 to 2,577,102 _2216 Psyr_2217: Psyr_2217 - conserved hypothetical protein, at 2,577,190 to 2,577,588 _2217 Psyr_2218: Psyr_2218 - Beta-lactamase-like protein, at 2,577,712 to 2,578,587 _2218 Position (kb) 2577 2578Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2576.364 kb on + strand, within Psyr_2215at 2576.376 kb on + strand, within Psyr_2215at 2576.945 kb on + strandat 2576.946 kb on - strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.626 kb on - strandat 2577.626 kb on - strandat 2577.637 kb on + strandat 2578.075 kb on + strand, within Psyr_2218at 2578.076 kb on - strand, within Psyr_2218at 2578.076 kb on - strand, within Psyr_2218at 2578.079 kb on + strand, within Psyr_2218at 2578.079 kb on + strand, within Psyr_2218at 2578.079 kb on + strand, within Psyr_2218at 2578.079 kb on + strand, within Psyr_2218at 2578.159 kb on + strand, within Psyr_2218at 2578.160 kb on - strandat 2578.160 kb on - strand, within Psyr_2218at 2578.160 kb on - strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.319 kb on + strand, within Psyr_2218at 2578.320 kb on - strand, within Psyr_2218at 2578.320 kb on - strand, within Psyr_2218at 2578.320 kb on - strand, within Psyr_2218at 2578.322 kb on + strand, within Psyr_2218at 2578.322 kb on + strand, within Psyr_2218at 2578.346 kb on + strand, within Psyr_2218at 2578.347 kb on - strand, within Psyr_2218at 2578.347 kb on - strand, within Psyr_2218at 2578.347 kb on - strand, within Psyr_2218at 2578.347 kb on - strand, within Psyr_2218at 2578.499 kb on + strand, within Psyr_2218at 2578.500 kb on - strandat 2578.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Physcion 10 mM
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2,576,364 + Psyr_2215 0.63 -1.0
2,576,376 + Psyr_2215 0.64 -1.6
2,576,945 + +0.8
2,576,946 - +0.2
2,577,625 + +0.4
2,577,625 + -0.7
2,577,625 + +1.5
2,577,625 + -1.9
2,577,626 - +0.8
2,577,626 - -0.4
2,577,637 + -1.0
2,578,075 + Psyr_2218 0.41 +1.3
2,578,076 - Psyr_2218 0.42 -1.6
2,578,076 - Psyr_2218 0.42 -0.6
2,578,079 + Psyr_2218 0.42 -0.3
2,578,079 + Psyr_2218 0.42 -1.6
2,578,079 + Psyr_2218 0.42 +1.6
2,578,079 + Psyr_2218 0.42 -0.2
2,578,159 + Psyr_2218 0.51 +1.8
2,578,160 - +0.8
2,578,160 - Psyr_2218 0.51 -0.3
2,578,160 - Psyr_2218 0.51 -0.1
2,578,319 + Psyr_2218 0.69 -0.6
2,578,319 + Psyr_2218 0.69 +0.1
2,578,319 + Psyr_2218 0.69 +2.8
2,578,319 + Psyr_2218 0.69 +0.4
2,578,319 + Psyr_2218 0.69 -0.6
2,578,319 + Psyr_2218 0.69 -0.7
2,578,319 + Psyr_2218 0.69 +1.0
2,578,319 + Psyr_2218 0.69 +0.7
2,578,320 - Psyr_2218 0.69 +0.4
2,578,320 - Psyr_2218 0.69 -0.5
2,578,320 - Psyr_2218 0.69 +0.7
2,578,322 + Psyr_2218 0.70 -0.8
2,578,322 + Psyr_2218 0.70 +0.4
2,578,346 + Psyr_2218 0.72 -0.3
2,578,347 - Psyr_2218 0.72 +0.3
2,578,347 - Psyr_2218 0.72 -0.8
2,578,347 - Psyr_2218 0.72 -0.0
2,578,347 - Psyr_2218 0.72 -0.7
2,578,499 + Psyr_2218 0.90 -0.2
2,578,500 - +0.5
2,578,500 - -0.7

Or see this region's nucleotide sequence