Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06536

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06536 and H281DRAFT_06537 are separated by 89 nucleotides H281DRAFT_06536: H281DRAFT_06536 - rare lipoprotein A, at 19,754 to 20,455 _06536 H281DRAFT_06537: H281DRAFT_06537 - lipoprotein NlpD, at 20,545 to 21,360 _06537 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.011 kb on + strandat 19.112 kb on + strandat 19.170 kb on + strandat 19.261 kb on + strandat 19.262 kb on - strandat 19.308 kb on + strandat 19.309 kb on - strandat 19.508 kb on + strandat 19.508 kb on + strandat 19.509 kb on - strandat 19.516 kb on + strandat 19.625 kb on - strandat 20.064 kb on - strand, within H281DRAFT_06536at 20.064 kb on - strand, within H281DRAFT_06536at 20.064 kb on - strand, within H281DRAFT_06536at 20.243 kb on - strand, within H281DRAFT_06536at 20.243 kb on - strand, within H281DRAFT_06536at 20.456 kb on - strandat 20.463 kb on + strandat 20.464 kb on - strandat 20.464 kb on - strandat 20.564 kb on + strandat 20.565 kb on - strandat 20.565 kb on - strandat 20.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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19,011 + +0.3
19,112 + -0.5
19,170 + -0.0
19,261 + -0.6
19,262 - -2.2
19,308 + +1.8
19,309 - +0.1
19,508 + +0.8
19,508 + -1.6
19,509 - -0.3
19,516 + +2.6
19,625 - +0.1
20,064 - H281DRAFT_06536 0.44 +0.4
20,064 - H281DRAFT_06536 0.44 +0.5
20,064 - H281DRAFT_06536 0.44 +0.1
20,243 - H281DRAFT_06536 0.70 -1.0
20,243 - H281DRAFT_06536 0.70 +0.6
20,456 - -0.4
20,463 + -0.6
20,464 - -0.9
20,464 - -0.4
20,564 + -0.6
20,565 - +0.2
20,565 - -0.1
20,565 - +0.0

Or see this region's nucleotide sequence