Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06288

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06286 and H281DRAFT_06287 are separated by 28 nucleotidesH281DRAFT_06287 and H281DRAFT_06288 are separated by 275 nucleotidesH281DRAFT_06288 and H281DRAFT_06289 overlap by 4 nucleotidesH281DRAFT_06289 and H281DRAFT_06290 are separated by 247 nucleotides H281DRAFT_06286: H281DRAFT_06286 - Thiol-disulfide isomerase or thioredoxin, at 68,087 to 68,623 _06286 H281DRAFT_06287: H281DRAFT_06287 - hypothetical protein, at 68,652 to 69,305 _06287 H281DRAFT_06288: H281DRAFT_06288 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 69,581 to 70,975 _06288 H281DRAFT_06289: H281DRAFT_06289 - hypothetical protein, at 70,972 to 71,574 _06289 H281DRAFT_06290: H281DRAFT_06290 - exoribonuclease-2, at 71,822 to 73,960 _06290 Position (kb) 69 70 71Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 68.653 kb on + strandat 68.654 kb on - strandat 68.773 kb on + strand, within H281DRAFT_06287at 68.774 kb on - strand, within H281DRAFT_06287at 68.854 kb on + strand, within H281DRAFT_06287at 68.893 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strandat 68.925 kb on + strand, within H281DRAFT_06287at 68.926 kb on - strand, within H281DRAFT_06287at 69.010 kb on + strand, within H281DRAFT_06287at 69.018 kb on - strand, within H281DRAFT_06287at 69.109 kb on + strand, within H281DRAFT_06287at 69.214 kb on + strand, within H281DRAFT_06287at 69.316 kb on + strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.319 kb on + strandat 69.319 kb on + strandat 69.319 kb on + strandat 69.320 kb on - strandat 69.320 kb on - strandat 69.538 kb on - strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.586 kb on + strandat 69.587 kb on - strandat 69.681 kb on + strandat 69.681 kb on + strandat 69.682 kb on - strandat 69.682 kb on - strandat 69.683 kb on + strandat 69.684 kb on - strandat 69.796 kb on - strand, within H281DRAFT_06288at 69.846 kb on - strand, within H281DRAFT_06288at 69.846 kb on - strand, within H281DRAFT_06288at 70.067 kb on + strand, within H281DRAFT_06288at 70.067 kb on + strand, within H281DRAFT_06288at 70.376 kb on + strand, within H281DRAFT_06288at 70.376 kb on + strand, within H281DRAFT_06288at 70.377 kb on - strand, within H281DRAFT_06288at 70.554 kb on + strand, within H281DRAFT_06288at 70.555 kb on - strand, within H281DRAFT_06288at 70.555 kb on - strand, within H281DRAFT_06288at 70.571 kb on + strand, within H281DRAFT_06288at 70.648 kb on + strandat 70.648 kb on + strandat 70.648 kb on + strand, within H281DRAFT_06288at 70.981 kb on + strandat 70.981 kb on + strandat 70.981 kb on + strandat 70.982 kb on - strandat 71.194 kb on + strand, within H281DRAFT_06289at 71.194 kb on + strand, within H281DRAFT_06289at 71.194 kb on + strand, within H281DRAFT_06289at 71.381 kb on - strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.503 kb on + strand, within H281DRAFT_06289at 71.503 kb on + strand, within H281DRAFT_06289at 71.504 kb on - strand, within H281DRAFT_06289at 71.504 kb on - strand, within H281DRAFT_06289at 71.582 kb on + strandat 71.714 kb on + strandat 71.714 kb on + strandat 71.715 kb on - strandat 71.715 kb on - strandat 71.715 kb on - strandat 71.717 kb on + strandat 71.718 kb on - strandat 71.718 kb on - strandat 71.771 kb on - strandat 71.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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68,653 + -0.6
68,654 - -0.6
68,773 + H281DRAFT_06287 0.19 -0.9
68,774 - H281DRAFT_06287 0.19 +0.6
68,854 + H281DRAFT_06287 0.31 +2.0
68,893 + H281DRAFT_06287 0.37 +1.1
68,917 + H281DRAFT_06287 0.41 +0.1
68,917 + H281DRAFT_06287 0.41 +0.3
68,917 + H281DRAFT_06287 0.41 -1.7
68,917 + H281DRAFT_06287 0.41 +0.5
68,918 - H281DRAFT_06287 0.41 +0.8
68,918 - H281DRAFT_06287 0.41 -1.0
68,918 - H281DRAFT_06287 0.41 +1.7
68,918 - H281DRAFT_06287 0.41 +1.5
68,918 - H281DRAFT_06287 0.41 -1.7
68,918 - H281DRAFT_06287 0.41 +0.4
68,918 - +0.4
68,925 + H281DRAFT_06287 0.42 -0.0
68,926 - H281DRAFT_06287 0.42 +1.4
69,010 + H281DRAFT_06287 0.55 +0.7
69,018 - H281DRAFT_06287 0.56 +0.6
69,109 + H281DRAFT_06287 0.70 +0.0
69,214 + H281DRAFT_06287 0.86 +1.0
69,316 + +0.0
69,317 - -0.5
69,317 - +0.4
69,317 - -2.9
69,317 - +1.0
69,319 + +1.6
69,319 + +1.0
69,319 + +0.9
69,320 - +0.0
69,320 - -1.6
69,538 - -0.3
69,580 + +0.0
69,580 + -0.0
69,580 + +0.9
69,580 + +0.5
69,580 + +0.6
69,580 + +1.1
69,581 - -0.3
69,581 - +0.3
69,581 - -0.5
69,581 - +0.0
69,581 - -0.6
69,586 + -1.5
69,587 - -2.9
69,681 + +0.2
69,681 + -2.2
69,682 - -2.2
69,682 - -2.1
69,683 + -2.2
69,684 - -0.7
69,796 - H281DRAFT_06288 0.15 -0.2
69,846 - H281DRAFT_06288 0.19 -3.9
69,846 - H281DRAFT_06288 0.19 -2.2
70,067 + H281DRAFT_06288 0.35 -3.6
70,067 + H281DRAFT_06288 0.35 -2.5
70,376 + H281DRAFT_06288 0.57 -0.1
70,376 + H281DRAFT_06288 0.57 +0.1
70,377 - H281DRAFT_06288 0.57 -2.1
70,554 + H281DRAFT_06288 0.70 -1.3
70,555 - H281DRAFT_06288 0.70 -2.3
70,555 - H281DRAFT_06288 0.70 -1.9
70,571 + H281DRAFT_06288 0.71 -2.1
70,648 + +2.0
70,648 + -0.6
70,648 + H281DRAFT_06288 0.76 -1.9
70,981 + -0.9
70,981 + +0.3
70,981 + +0.4
70,982 - +0.7
71,194 + H281DRAFT_06289 0.37 +1.0
71,194 + H281DRAFT_06289 0.37 +2.7
71,194 + H281DRAFT_06289 0.37 +0.8
71,381 - H281DRAFT_06289 0.68 +0.8
71,383 + H281DRAFT_06289 0.68 -0.3
71,383 + H281DRAFT_06289 0.68 +2.4
71,383 + H281DRAFT_06289 0.68 -0.3
71,384 - H281DRAFT_06289 0.68 +0.5
71,384 - H281DRAFT_06289 0.68 -1.2
71,384 - H281DRAFT_06289 0.68 -2.2
71,384 - H281DRAFT_06289 0.68 -1.8
71,457 + H281DRAFT_06289 0.80 -0.1
71,457 + H281DRAFT_06289 0.80 +1.9
71,457 + H281DRAFT_06289 0.80 +0.1
71,503 + H281DRAFT_06289 0.88 -0.9
71,503 + H281DRAFT_06289 0.88 +0.8
71,504 - H281DRAFT_06289 0.88 -1.4
71,504 - H281DRAFT_06289 0.88 +0.9
71,582 + +0.3
71,714 + +0.4
71,714 + +0.6
71,715 - -2.2
71,715 - +0.3
71,715 - +1.0
71,717 + +1.2
71,718 - +0.9
71,718 - +1.4
71,771 - +2.5
71,816 + +0.4

Or see this region's nucleotide sequence