Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06234

Experiment: Bu1_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06233 and H281DRAFT_06234 overlap by 4 nucleotidesH281DRAFT_06234 and H281DRAFT_06235 are separated by 17 nucleotides H281DRAFT_06233: H281DRAFT_06233 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase, at 12,081 to 13,652 _06233 H281DRAFT_06234: H281DRAFT_06234 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, at 13,649 to 15,076 _06234 H281DRAFT_06235: H281DRAFT_06235 - Phospho-N-acetylmuramoyl-pentapeptide-transferase, at 15,094 to 16,263 _06235 Position (kb) 13 14 15 16Strain fitness (log2 ratio) -1 0 1at 15.079 kb on + strandat 15.079 kb on + strandat 15.079 kb on + strandat 15.079 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
remove
15,079 + +0.9
15,079 + +1.2
15,079 + -1.2
15,079 + +1.4

Or see this region's nucleotide sequence