Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06206

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06205 and H281DRAFT_06206 are separated by 825 nucleotidesH281DRAFT_06206 and H281DRAFT_06207 are separated by 441 nucleotides H281DRAFT_06205: H281DRAFT_06205 - transcriptional regulator, GntR family, at 96,182 to 96,907 _06205 H281DRAFT_06206: H281DRAFT_06206 - 2-methylcitrate dehydratase PrpD, at 97,733 to 99,223 _06206 H281DRAFT_06207: H281DRAFT_06207 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 99,665 to 100,237 _06207 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 96.921 kb on - strandat 96.925 kb on - strandat 97.063 kb on + strandat 97.064 kb on - strandat 97.064 kb on - strandat 97.064 kb on - strandat 97.064 kb on - strandat 97.217 kb on - strandat 97.224 kb on + strandat 97.224 kb on + strandat 97.325 kb on + strandat 97.523 kb on - strandat 97.635 kb on - strandat 97.635 kb on - strandat 97.635 kb on - strandat 97.726 kb on + strandat 97.732 kb on + strandat 97.732 kb on + strandat 97.732 kb on + strandat 97.732 kb on + strandat 97.732 kb on + strandat 97.732 kb on + strandat 97.733 kb on - strandat 97.733 kb on - strandat 97.733 kb on - strandat 97.805 kb on - strandat 97.810 kb on + strandat 98.143 kb on + strand, within H281DRAFT_06206at 98.153 kb on + strand, within H281DRAFT_06206at 98.154 kb on - strand, within H281DRAFT_06206at 98.161 kb on + strand, within H281DRAFT_06206at 98.219 kb on + strand, within H281DRAFT_06206at 98.228 kb on + strand, within H281DRAFT_06206at 98.308 kb on - strand, within H281DRAFT_06206at 98.309 kb on + strand, within H281DRAFT_06206at 98.309 kb on + strand, within H281DRAFT_06206at 98.322 kb on - strand, within H281DRAFT_06206at 98.358 kb on + strand, within H281DRAFT_06206at 98.359 kb on - strand, within H281DRAFT_06206at 98.547 kb on - strand, within H281DRAFT_06206at 98.547 kb on - strand, within H281DRAFT_06206at 98.548 kb on + strand, within H281DRAFT_06206at 98.548 kb on + strand, within H281DRAFT_06206at 98.616 kb on - strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.775 kb on + strand, within H281DRAFT_06206at 98.775 kb on + strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strandat 98.852 kb on + strandat 98.852 kb on + strand, within H281DRAFT_06206at 98.853 kb on - strandat 98.955 kb on + strand, within H281DRAFT_06206at 98.955 kb on + strand, within H281DRAFT_06206at 98.959 kb on + strand, within H281DRAFT_06206at 98.960 kb on - strand, within H281DRAFT_06206at 99.007 kb on + strand, within H281DRAFT_06206at 99.008 kb on - strand, within H281DRAFT_06206at 99.061 kb on + strand, within H281DRAFT_06206at 99.061 kb on + strand, within H281DRAFT_06206at 99.180 kb on + strandat 99.181 kb on - strandat 99.181 kb on - strandat 99.197 kb on - strandat 99.534 kb on - strandat 99.546 kb on + strandat 99.547 kb on - strandat 99.602 kb on + strandat 99.603 kb on - strandat 99.603 kb on - strandat 99.607 kb on + strandat 99.608 kb on - strandat 99.630 kb on - strandat 99.630 kb on - strandat 99.761 kb on + strand, within H281DRAFT_06207at 99.762 kb on - strand, within H281DRAFT_06207at 99.901 kb on + strand, within H281DRAFT_06207at 99.904 kb on + strand, within H281DRAFT_06207at 99.953 kb on - strand, within H281DRAFT_06207at 99.973 kb on + strand, within H281DRAFT_06207at 100.024 kb on + strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.073 kb on + strand, within H281DRAFT_06207at 100.074 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.176 kb on - strand, within H281DRAFT_06207at 100.205 kb on + strandat 100.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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96,921 - +0.1
96,925 - -0.1
97,063 + -3.0
97,064 - +1.4
97,064 - +0.7
97,064 - -1.5
97,064 - +1.1
97,217 - +0.5
97,224 + +0.4
97,224 + -0.1
97,325 + -0.2
97,523 - -0.3
97,635 - -0.1
97,635 - +0.9
97,635 - -1.2
97,726 + -1.2
97,732 + -0.1
97,732 + +0.6
97,732 + -0.3
97,732 + +0.2
97,732 + +0.5
97,732 + -1.9
97,733 - -0.2
97,733 - +1.4
97,733 - -0.0
97,805 - -1.3
97,810 + +0.4
98,143 + H281DRAFT_06206 0.27 +0.4
98,153 + H281DRAFT_06206 0.28 -1.9
98,154 - H281DRAFT_06206 0.28 +2.1
98,161 + H281DRAFT_06206 0.29 -0.2
98,219 + H281DRAFT_06206 0.33 +0.0
98,228 + H281DRAFT_06206 0.33 +0.3
98,308 - H281DRAFT_06206 0.39 -0.7
98,309 + H281DRAFT_06206 0.39 -0.0
98,309 + H281DRAFT_06206 0.39 -1.3
98,322 - H281DRAFT_06206 0.40 +0.7
98,358 + H281DRAFT_06206 0.42 +0.1
98,359 - H281DRAFT_06206 0.42 +0.5
98,547 - H281DRAFT_06206 0.55 +0.5
98,547 - H281DRAFT_06206 0.55 +0.1
98,548 + H281DRAFT_06206 0.55 +0.5
98,548 + H281DRAFT_06206 0.55 +0.4
98,616 - H281DRAFT_06206 0.59 +0.9
98,669 + H281DRAFT_06206 0.63 -2.6
98,669 + H281DRAFT_06206 0.63 +1.4
98,669 + H281DRAFT_06206 0.63 +0.6
98,669 + H281DRAFT_06206 0.63 +0.2
98,670 - H281DRAFT_06206 0.63 -0.5
98,670 - H281DRAFT_06206 0.63 +0.0
98,670 - H281DRAFT_06206 0.63 +1.0
98,775 + H281DRAFT_06206 0.70 +0.3
98,775 + H281DRAFT_06206 0.70 -0.1
98,776 - H281DRAFT_06206 0.70 -1.4
98,776 - H281DRAFT_06206 0.70 -3.8
98,776 - H281DRAFT_06206 0.70 -0.7
98,776 - H281DRAFT_06206 0.70 +0.3
98,776 - +2.7
98,852 + +1.7
98,852 + H281DRAFT_06206 0.75 -0.4
98,853 - +0.9
98,955 + H281DRAFT_06206 0.82 +0.7
98,955 + H281DRAFT_06206 0.82 +0.3
98,959 + H281DRAFT_06206 0.82 -0.4
98,960 - H281DRAFT_06206 0.82 -0.2
99,007 + H281DRAFT_06206 0.85 -1.0
99,008 - H281DRAFT_06206 0.86 +0.4
99,061 + H281DRAFT_06206 0.89 -1.2
99,061 + H281DRAFT_06206 0.89 -0.6
99,180 + -0.7
99,181 - -0.6
99,181 - -0.1
99,197 - +0.6
99,534 - -0.2
99,546 + +1.7
99,547 - +0.1
99,602 + -1.0
99,603 - -1.7
99,603 - +1.4
99,607 + +2.1
99,608 - +1.7
99,630 - +0.0
99,630 - +0.0
99,761 + H281DRAFT_06207 0.17 +0.6
99,762 - H281DRAFT_06207 0.17 +0.2
99,901 + H281DRAFT_06207 0.41 +0.5
99,904 + H281DRAFT_06207 0.42 -0.3
99,953 - H281DRAFT_06207 0.50 +1.4
99,973 + H281DRAFT_06207 0.54 -0.7
100,024 + H281DRAFT_06207 0.63 +0.5
100,025 - H281DRAFT_06207 0.63 +0.5
100,025 - H281DRAFT_06207 0.63 -2.4
100,025 - H281DRAFT_06207 0.63 +0.0
100,025 - H281DRAFT_06207 0.63 +0.1
100,025 - H281DRAFT_06207 0.63 +0.3
100,073 + H281DRAFT_06207 0.71 +1.0
100,074 - H281DRAFT_06207 0.71 +2.2
100,153 - H281DRAFT_06207 0.85 -2.0
100,153 - H281DRAFT_06207 0.85 -0.3
100,166 + H281DRAFT_06207 0.87 -1.6
100,166 + H281DRAFT_06207 0.87 -2.6
100,166 + H281DRAFT_06207 0.87 -1.4
100,176 - H281DRAFT_06207 0.89 -0.6
100,205 + -0.3
100,218 + -1.2

Or see this region's nucleotide sequence