Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06192

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06190 and H281DRAFT_06191 are separated by 115 nucleotidesH281DRAFT_06191 and H281DRAFT_06192 are separated by 194 nucleotidesH281DRAFT_06192 and H281DRAFT_06193 are separated by 412 nucleotides H281DRAFT_06190: H281DRAFT_06190 - DNA-binding protein H-NS, at 79,958 to 80,242 _06190 H281DRAFT_06191: H281DRAFT_06191 - hypothetical protein, at 80,358 to 80,807 _06191 H281DRAFT_06192: H281DRAFT_06192 - hypothetical protein, at 81,002 to 81,835 _06192 H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075 _06193 Position (kb) 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 80.055 kb on + strand, within H281DRAFT_06190at 80.230 kb on + strandat 80.230 kb on + strandat 80.230 kb on + strandat 80.232 kb on + strandat 80.233 kb on - strandat 80.264 kb on - strandat 80.278 kb on + strandat 80.278 kb on + strandat 80.353 kb on + strandat 80.354 kb on - strandat 80.354 kb on - strandat 80.660 kb on + strand, within H281DRAFT_06191at 80.661 kb on - strand, within H281DRAFT_06191at 80.687 kb on + strand, within H281DRAFT_06191at 80.688 kb on - strand, within H281DRAFT_06191at 80.688 kb on - strand, within H281DRAFT_06191at 80.691 kb on + strand, within H281DRAFT_06191at 80.692 kb on - strand, within H281DRAFT_06191at 80.692 kb on - strand, within H281DRAFT_06191at 80.705 kb on - strand, within H281DRAFT_06191at 81.033 kb on - strandat 81.033 kb on - strandat 81.188 kb on - strand, within H281DRAFT_06192at 81.188 kb on - strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.426 kb on - strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.501 kb on + strand, within H281DRAFT_06192at 81.501 kb on + strand, within H281DRAFT_06192at 81.525 kb on + strand, within H281DRAFT_06192at 81.525 kb on + strand, within H281DRAFT_06192at 81.526 kb on - strand, within H281DRAFT_06192at 81.532 kb on + strand, within H281DRAFT_06192at 81.591 kb on - strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.702 kb on + strand, within H281DRAFT_06192at 81.702 kb on + strand, within H281DRAFT_06192at 81.703 kb on - strand, within H281DRAFT_06192at 81.703 kb on - strand, within H281DRAFT_06192at 81.837 kb on + strandat 81.838 kb on - strandat 81.958 kb on - strandat 81.975 kb on + strandat 81.975 kb on + strandat 81.976 kb on - strandat 81.992 kb on + strandat 82.007 kb on + strandat 82.008 kb on - strandat 82.039 kb on + strandat 82.039 kb on + strandat 82.105 kb on + strandat 82.105 kb on + strandat 82.116 kb on + strandat 82.318 kb on + strandat 82.332 kb on + strand, within H281DRAFT_06193at 82.333 kb on - strand, within H281DRAFT_06193at 82.389 kb on - strand, within H281DRAFT_06193at 82.514 kb on + strand, within H281DRAFT_06193at 82.515 kb on - strand, within H281DRAFT_06193at 82.580 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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80,055 + H281DRAFT_06190 0.34 +0.1
80,230 + +0.9
80,230 + -1.9
80,230 + -0.2
80,232 + -0.9
80,233 - +0.1
80,264 - -0.1
80,278 + -1.3
80,278 + +0.5
80,353 + -0.5
80,354 - -0.3
80,354 - -1.1
80,660 + H281DRAFT_06191 0.67 -0.3
80,661 - H281DRAFT_06191 0.67 +0.3
80,687 + H281DRAFT_06191 0.73 -0.8
80,688 - H281DRAFT_06191 0.73 +0.9
80,688 - H281DRAFT_06191 0.73 +1.8
80,691 + H281DRAFT_06191 0.74 -1.6
80,692 - H281DRAFT_06191 0.74 -0.6
80,692 - H281DRAFT_06191 0.74 -0.4
80,705 - H281DRAFT_06191 0.77 -1.0
81,033 - -1.3
81,033 - -0.1
81,188 - H281DRAFT_06192 0.22 +2.6
81,188 - H281DRAFT_06192 0.22 +0.2
81,364 + H281DRAFT_06192 0.43 -0.9
81,364 + H281DRAFT_06192 0.43 -0.5
81,364 + H281DRAFT_06192 0.43 +1.0
81,364 + H281DRAFT_06192 0.43 +0.8
81,365 - H281DRAFT_06192 0.44 +0.2
81,365 - H281DRAFT_06192 0.44 +0.4
81,365 - H281DRAFT_06192 0.44 -0.4
81,409 - H281DRAFT_06192 0.49 -0.5
81,409 - H281DRAFT_06192 0.49 -1.3
81,409 - H281DRAFT_06192 0.49 +1.1
81,409 - H281DRAFT_06192 0.49 +0.3
81,426 - H281DRAFT_06192 0.51 -2.4
81,498 + H281DRAFT_06192 0.59 -0.5
81,498 + H281DRAFT_06192 0.59 +0.8
81,498 + H281DRAFT_06192 0.59 +1.1
81,498 + H281DRAFT_06192 0.59 -1.1
81,498 + H281DRAFT_06192 0.59 +0.8
81,498 + H281DRAFT_06192 0.59 -0.0
81,498 + H281DRAFT_06192 0.59 +0.3
81,498 + H281DRAFT_06192 0.59 -0.8
81,498 + H281DRAFT_06192 0.59 -0.4
81,498 + H281DRAFT_06192 0.59 -1.3
81,499 - H281DRAFT_06192 0.60 -0.8
81,499 - H281DRAFT_06192 0.60 +0.3
81,499 - H281DRAFT_06192 0.60 +0.2
81,499 - H281DRAFT_06192 0.60 -0.5
81,499 - H281DRAFT_06192 0.60 -2.6
81,501 + H281DRAFT_06192 0.60 +0.7
81,501 + H281DRAFT_06192 0.60 +0.1
81,525 + H281DRAFT_06192 0.63 +1.9
81,525 + H281DRAFT_06192 0.63 -1.2
81,526 - H281DRAFT_06192 0.63 -0.6
81,532 + H281DRAFT_06192 0.64 -1.1
81,591 - H281DRAFT_06192 0.71 +1.7
81,700 + H281DRAFT_06192 0.84 +0.4
81,700 + H281DRAFT_06192 0.84 +0.4
81,700 + H281DRAFT_06192 0.84 -0.1
81,700 + H281DRAFT_06192 0.84 -0.7
81,700 + H281DRAFT_06192 0.84 -2.6
81,701 - H281DRAFT_06192 0.84 +0.5
81,701 - H281DRAFT_06192 0.84 +1.0
81,701 - H281DRAFT_06192 0.84 -0.4
81,702 + H281DRAFT_06192 0.84 -0.0
81,702 + H281DRAFT_06192 0.84 -0.7
81,703 - H281DRAFT_06192 0.84 -1.6
81,703 - H281DRAFT_06192 0.84 +0.4
81,837 + -0.3
81,838 - -0.6
81,958 - -0.5
81,975 + -0.6
81,975 + +0.9
81,976 - -1.4
81,992 + -0.3
82,007 + -0.5
82,008 - +1.1
82,039 + +0.8
82,039 + -0.1
82,105 + -1.4
82,105 + +0.5
82,116 + +0.1
82,318 + -0.2
82,332 + H281DRAFT_06193 0.10 +1.3
82,333 - H281DRAFT_06193 0.10 -2.8
82,389 - H281DRAFT_06193 0.17 -0.4
82,514 + H281DRAFT_06193 0.32 -1.1
82,515 - H281DRAFT_06193 0.32 +0.2
82,580 + H281DRAFT_06193 0.40 -0.2
82,708 + H281DRAFT_06193 0.56 +0.4
82,708 + H281DRAFT_06193 0.56 +0.7
82,708 + H281DRAFT_06193 0.56 -0.2
82,709 - H281DRAFT_06193 0.56 +0.4
82,709 - H281DRAFT_06193 0.56 +0.2
82,709 - H281DRAFT_06193 0.56 -1.1
82,754 + H281DRAFT_06193 0.61 -0.2
82,754 + H281DRAFT_06193 0.61 -1.0
82,754 + H281DRAFT_06193 0.61 -0.3
82,755 - H281DRAFT_06193 0.61 +0.8
82,755 - H281DRAFT_06193 0.61 -0.0

Or see this region's nucleotide sequence