Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05018

Experiment: Bu1_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05017 and H281DRAFT_05018 are separated by 85 nucleotidesH281DRAFT_05018 and H281DRAFT_05019 are separated by 264 nucleotides H281DRAFT_05017: H281DRAFT_05017 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 200,907 to 201,662 _05017 H281DRAFT_05018: H281DRAFT_05018 - TIGR03118 family protein, at 201,748 to 202,857 _05018 H281DRAFT_05019: H281DRAFT_05019 - hypothetical protein, at 203,122 to 204,849 _05019 Position (kb) 201 202 203Strain fitness (log2 ratio) -1 0 1at 201.236 kb on - strandat 201.502 kb on - strand, within H281DRAFT_05017at 201.561 kb on + strand, within H281DRAFT_05017at 201.562 kb on - strand, within H281DRAFT_05017at 201.809 kb on + strandat 201.810 kb on - strandat 202.301 kb on + strand, within H281DRAFT_05018at 202.302 kb on - strand, within H281DRAFT_05018at 202.347 kb on - strand, within H281DRAFT_05018at 202.817 kb on - strandat 202.837 kb on + strandat 202.851 kb on - strandat 202.851 kb on - strandat 202.891 kb on - strandat 203.026 kb on + strandat 203.044 kb on - strandat 203.044 kb on - strandat 203.072 kb on + strandat 203.251 kb on + strandat 203.846 kb on + strand, within H281DRAFT_05019

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
remove
201,236 - +0.9
201,502 - H281DRAFT_05017 0.79 +0.2
201,561 + H281DRAFT_05017 0.87 +1.1
201,562 - H281DRAFT_05017 0.87 +0.2
201,809 + +0.8
201,810 - +0.9
202,301 + H281DRAFT_05018 0.50 -1.0
202,302 - H281DRAFT_05018 0.50 -0.9
202,347 - H281DRAFT_05018 0.54 +0.2
202,817 - +0.5
202,837 + -1.0
202,851 - -0.1
202,851 - -0.1
202,891 - -1.1
203,026 + +0.4
203,044 - +1.0
203,044 - +0.3
203,072 + -0.3
203,251 + -0.2
203,846 + H281DRAFT_05019 0.42 -1.6

Or see this region's nucleotide sequence