Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04846

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04845 and H281DRAFT_04846 are separated by 301 nucleotidesH281DRAFT_04846 and H281DRAFT_04847 are separated by 139 nucleotides H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821 _04845 H281DRAFT_04846: H281DRAFT_04846 - Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose), at 288,123 to 288,578 _04846 H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151 _04847 Position (kb) 288 289Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 287.393 kb on - strand, within H281DRAFT_04845at 287.413 kb on - strand, within H281DRAFT_04845at 287.457 kb on + strand, within H281DRAFT_04845at 287.458 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.631 kb on + strand, within H281DRAFT_04845at 287.632 kb on - strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.647 kb on + strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.648 kb on - strand, within H281DRAFT_04845at 287.658 kb on - strand, within H281DRAFT_04845at 287.737 kb on + strandat 287.756 kb on - strandat 287.756 kb on - strandat 287.889 kb on + strandat 287.889 kb on + strandat 287.913 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.929 kb on + strandat 287.930 kb on - strandat 288.027 kb on + strandat 288.027 kb on + strandat 288.028 kb on - strandat 288.028 kb on - strandat 288.117 kb on + strandat 288.118 kb on - strandat 288.118 kb on - strandat 288.305 kb on - strand, within H281DRAFT_04846at 288.324 kb on + strand, within H281DRAFT_04846at 288.420 kb on - strand, within H281DRAFT_04846at 288.423 kb on + strand, within H281DRAFT_04846at 288.468 kb on - strand, within H281DRAFT_04846at 288.518 kb on + strand, within H281DRAFT_04846at 288.578 kb on + strandat 288.578 kb on + strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.579 kb on - strandat 288.603 kb on + strandat 288.664 kb on - strandat 288.664 kb on - strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.668 kb on + strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.669 kb on - strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.779 kb on + strandat 288.780 kb on - strandat 288.780 kb on - strandat 288.843 kb on + strandat 288.843 kb on + strandat 288.844 kb on - strandat 288.860 kb on + strandat 288.861 kb on - strandat 288.861 kb on - strandat 288.993 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.037 kb on + strand, within H281DRAFT_04847at 289.038 kb on - strand, within H281DRAFT_04847at 289.038 kb on - strand, within H281DRAFT_04847at 289.056 kb on - strand, within H281DRAFT_04847at 289.072 kb on + strand, within H281DRAFT_04847at 289.073 kb on - strand, within H281DRAFT_04847at 289.073 kb on - strand, within H281DRAFT_04847at 289.207 kb on + strand, within H281DRAFT_04847at 289.391 kb on + strand, within H281DRAFT_04847at 289.392 kb on - strand, within H281DRAFT_04847at 289.398 kb on + strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.399 kb on - strand, within H281DRAFT_04847at 289.508 kb on + strand, within H281DRAFT_04847at 289.529 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847at 289.571 kb on + strand, within H281DRAFT_04847

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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287,393 - H281DRAFT_04845 0.62 -2.7
287,413 - H281DRAFT_04845 0.64 +1.4
287,457 + H281DRAFT_04845 0.68 +9.2
287,458 - H281DRAFT_04845 0.68 -2.4
287,585 - H281DRAFT_04845 0.79 -1.5
287,585 - H281DRAFT_04845 0.79 -3.3
287,585 - H281DRAFT_04845 0.79 -1.4
287,585 - H281DRAFT_04845 0.79 +6.3
287,585 - H281DRAFT_04845 0.79 -1.3
287,631 + H281DRAFT_04845 0.83 +9.5
287,632 - H281DRAFT_04845 0.83 -0.1
287,647 + H281DRAFT_04845 0.85 +9.2
287,647 + H281DRAFT_04845 0.85 +9.9
287,647 + H281DRAFT_04845 0.85 +9.7
287,648 - H281DRAFT_04845 0.85 -2.7
287,648 - H281DRAFT_04845 0.85 +0.2
287,648 - H281DRAFT_04845 0.85 +0.0
287,658 - H281DRAFT_04845 0.85 -2.9
287,737 + +10.1
287,756 - -1.1
287,756 - -1.0
287,889 + +9.7
287,889 + +9.8
287,913 + +10.1
287,929 + +9.2
287,929 + +9.9
287,929 + +10.3
287,930 - +0.1
288,027 + +9.8
288,027 + +10.6
288,028 - -2.4
288,028 - +0.5
288,117 + +10.1
288,118 - -2.3
288,118 - -2.3
288,305 - H281DRAFT_04846 0.40 +3.0
288,324 + H281DRAFT_04846 0.44 +9.5
288,420 - H281DRAFT_04846 0.65 +7.9
288,423 + H281DRAFT_04846 0.66 +10.2
288,468 - H281DRAFT_04846 0.76 +4.4
288,518 + H281DRAFT_04846 0.87 +9.7
288,578 + +9.8
288,578 + +9.4
288,579 - -4.8
288,579 - -2.4
288,579 - -3.9
288,579 - -1.7
288,603 + +8.9
288,664 - -0.1
288,664 - -2.7
288,668 + +9.8
288,668 + +10.1
288,668 + +10.0
288,669 - +0.3
288,669 - +0.6
288,669 - +0.6
288,669 - +0.3
288,669 - +0.5
288,779 + -3.4
288,779 + -1.5
288,779 + -1.1
288,780 - -1.2
288,780 - -1.1
288,843 + -1.3
288,843 + -1.1
288,844 - -1.4
288,860 + -1.5
288,861 - -0.7
288,861 - -0.6
288,993 + H281DRAFT_04847 0.19 -0.1
289,037 + H281DRAFT_04847 0.22 +0.6
289,037 + H281DRAFT_04847 0.22 +0.5
289,037 + H281DRAFT_04847 0.22 +0.6
289,037 + H281DRAFT_04847 0.22 +0.2
289,038 - H281DRAFT_04847 0.22 -3.0
289,038 - H281DRAFT_04847 0.22 +0.5
289,056 - H281DRAFT_04847 0.24 +0.1
289,072 + H281DRAFT_04847 0.25 -0.0
289,073 - H281DRAFT_04847 0.25 +0.3
289,073 - H281DRAFT_04847 0.25 +1.6
289,207 + H281DRAFT_04847 0.34 +1.6
289,391 + H281DRAFT_04847 0.47 +0.5
289,392 - H281DRAFT_04847 0.47 +2.2
289,398 + H281DRAFT_04847 0.47 +0.3
289,399 - H281DRAFT_04847 0.47 +0.3
289,399 - H281DRAFT_04847 0.47 +3.0
289,399 - H281DRAFT_04847 0.47 -0.6
289,399 - H281DRAFT_04847 0.47 +0.3
289,508 + H281DRAFT_04847 0.55 -0.5
289,529 + H281DRAFT_04847 0.57 +3.6
289,571 + H281DRAFT_04847 0.59 +1.0
289,571 + H281DRAFT_04847 0.59 +1.7
289,571 + H281DRAFT_04847 0.59 +0.8

Or see this region's nucleotide sequence