Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04798 and H281DRAFT_04799 are separated by 102 nucleotides H281DRAFT_04799 and H281DRAFT_04800 are separated by 346 nucleotides
H281DRAFT_04798: H281DRAFT_04798 - Predicted xylanase/chitin deacetylase, at 228,430 to 229,359
_04798
H281DRAFT_04799: H281DRAFT_04799 - parallel beta-helix repeat (two copies), at 229,462 to 231,264
_04799
H281DRAFT_04800: H281DRAFT_04800 - protein SCO1/2, at 231,611 to 232,255
_04800
Position (kb) 229
230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 228.738 kb on + strand, within H281DRAFT_04798 at 228.943 kb on + strand, within H281DRAFT_04798 at 229.085 kb on - strand, within H281DRAFT_04798 at 229.440 kb on - strand at 229.569 kb on + strand at 229.673 kb on + strand, within H281DRAFT_04799 at 230.038 kb on - strand, within H281DRAFT_04799 at 230.084 kb on - strand, within H281DRAFT_04799 at 230.360 kb on + strand, within H281DRAFT_04799 at 230.360 kb on + strand, within H281DRAFT_04799 at 230.364 kb on + strand, within H281DRAFT_04799 at 230.667 kb on + strand, within H281DRAFT_04799 at 230.667 kb on + strand, within H281DRAFT_04799 at 230.903 kb on - strand, within H281DRAFT_04799 at 230.903 kb on - strand, within H281DRAFT_04799 at 230.998 kb on + strand, within H281DRAFT_04799 at 230.998 kb on + strand, within H281DRAFT_04799 at 231.029 kb on + strand, within H281DRAFT_04799 at 231.030 kb on - strand, within H281DRAFT_04799 at 231.295 kb on + strand at 231.891 kb on + strand, within H281DRAFT_04800 at 231.892 kb on - strand, within H281DRAFT_04800 at 232.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 228,738 + H281DRAFT_04798 0.33 -3.0 228,943 + H281DRAFT_04798 0.55 -0.4 229,085 - H281DRAFT_04798 0.70 +0.1 229,440 - +0.0 229,569 + -0.5 229,673 + H281DRAFT_04799 0.12 -0.6 230,038 - H281DRAFT_04799 0.32 -1.7 230,084 - H281DRAFT_04799 0.34 -2.2 230,360 + H281DRAFT_04799 0.50 +1.2 230,360 + H281DRAFT_04799 0.50 -0.4 230,364 + H281DRAFT_04799 0.50 -0.8 230,667 + H281DRAFT_04799 0.67 +0.1 230,667 + H281DRAFT_04799 0.67 -0.5 230,903 - H281DRAFT_04799 0.80 -2.3 230,903 - H281DRAFT_04799 0.80 -1.4 230,998 + H281DRAFT_04799 0.85 -0.8 230,998 + H281DRAFT_04799 0.85 -0.8 231,029 + H281DRAFT_04799 0.87 +0.2 231,030 - H281DRAFT_04799 0.87 -0.9 231,295 + -0.3 231,891 + H281DRAFT_04800 0.43 +1.6 231,892 - H281DRAFT_04800 0.44 +0.0 232,253 + +0.8
Or see this region's nucleotide sequence