Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04453

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04452 and H281DRAFT_04453 overlap by 4 nucleotidesH281DRAFT_04453 and H281DRAFT_04454 overlap by 4 nucleotides H281DRAFT_04452: H281DRAFT_04452 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 172,732 to 174,048 _04452 H281DRAFT_04453: H281DRAFT_04453 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 174,045 to 174,797 _04453 H281DRAFT_04454: H281DRAFT_04454 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 174,794 to 175,507 _04454 Position (kb) 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 173.219 kb on + strand, within H281DRAFT_04452at 173.404 kb on + strand, within H281DRAFT_04452at 173.405 kb on - strand, within H281DRAFT_04452at 173.651 kb on - strand, within H281DRAFT_04452at 173.721 kb on + strand, within H281DRAFT_04452at 173.768 kb on - strand, within H281DRAFT_04452at 173.834 kb on - strand, within H281DRAFT_04452at 174.333 kb on + strand, within H281DRAFT_04453at 174.492 kb on + strand, within H281DRAFT_04453at 174.493 kb on - strand, within H281DRAFT_04453at 174.493 kb on - strand, within H281DRAFT_04453at 174.523 kb on + strand, within H281DRAFT_04453at 174.546 kb on - strand, within H281DRAFT_04453at 174.771 kb on + strandat 175.524 kb on - strandat 175.524 kb on - strandat 175.524 kb on - strandat 175.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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173,219 + H281DRAFT_04452 0.37 +3.1
173,404 + H281DRAFT_04452 0.51 -3.0
173,405 - H281DRAFT_04452 0.51 +0.9
173,651 - H281DRAFT_04452 0.70 +0.5
173,721 + H281DRAFT_04452 0.75 -3.4
173,768 - H281DRAFT_04452 0.79 -0.5
173,834 - H281DRAFT_04452 0.84 -0.8
174,333 + H281DRAFT_04453 0.38 -1.4
174,492 + H281DRAFT_04453 0.59 -0.1
174,493 - H281DRAFT_04453 0.59 -1.7
174,493 - H281DRAFT_04453 0.59 +2.0
174,523 + H281DRAFT_04453 0.63 -1.4
174,546 - H281DRAFT_04453 0.67 -1.0
174,771 + -0.5
175,524 - +1.1
175,524 - +0.8
175,524 - +0.2
175,742 + +0.3

Or see this region's nucleotide sequence