Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04259

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04258 and H281DRAFT_04259 are separated by 238 nucleotidesH281DRAFT_04259 and H281DRAFT_04260 are separated by 126 nucleotidesH281DRAFT_04260 and H281DRAFT_04261 are separated by 265 nucleotides H281DRAFT_04258: H281DRAFT_04258 - tyrosyl-tRNA synthetase, at 376,350 to 377,600 _04258 H281DRAFT_04259: H281DRAFT_04259 - anhydro-N-acetylmuramic acid kinase, at 377,839 to 378,969 _04259 H281DRAFT_04260: H281DRAFT_04260 - iron-sulfur cluster insertion protein, at 379,096 to 379,461 _04260 H281DRAFT_04261: H281DRAFT_04261 - SSU ribosomal protein S9P, at 379,727 to 380,119 _04261 Position (kb) 377 378 379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 377.640 kb on + strandat 377.640 kb on + strandat 377.641 kb on - strandat 377.641 kb on - strandat 377.748 kb on - strandat 377.748 kb on - strandat 377.749 kb on + strandat 377.749 kb on + strandat 377.772 kb on - strandat 377.779 kb on + strandat 377.780 kb on - strandat 377.780 kb on - strandat 378.070 kb on + strand, within H281DRAFT_04259at 378.070 kb on + strand, within H281DRAFT_04259at 378.071 kb on - strand, within H281DRAFT_04259at 378.072 kb on + strand, within H281DRAFT_04259at 378.072 kb on + strand, within H281DRAFT_04259at 378.095 kb on + strand, within H281DRAFT_04259at 378.225 kb on + strand, within H281DRAFT_04259at 378.226 kb on - strand, within H281DRAFT_04259at 378.341 kb on + strand, within H281DRAFT_04259at 378.342 kb on - strand, within H281DRAFT_04259at 378.342 kb on - strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.369 kb on + strand, within H281DRAFT_04259at 378.370 kb on - strand, within H281DRAFT_04259at 378.370 kb on - strand, within H281DRAFT_04259at 378.370 kb on - strand, within H281DRAFT_04259at 378.370 kb on - strand, within H281DRAFT_04259at 378.370 kb on - strand, within H281DRAFT_04259at 378.372 kb on + strand, within H281DRAFT_04259at 378.373 kb on - strand, within H281DRAFT_04259at 378.373 kb on - strand, within H281DRAFT_04259at 378.541 kb on + strand, within H281DRAFT_04259at 378.541 kb on + strand, within H281DRAFT_04259at 378.542 kb on - strand, within H281DRAFT_04259at 378.542 kb on - strand, within H281DRAFT_04259at 378.542 kb on - strand, within H281DRAFT_04259at 378.724 kb on + strandat 378.725 kb on - strand, within H281DRAFT_04259at 378.725 kb on - strand, within H281DRAFT_04259at 378.725 kb on - strand, within H281DRAFT_04259at 378.798 kb on - strand, within H281DRAFT_04259at 378.798 kb on - strand, within H281DRAFT_04259at 379.484 kb on - strandat 379.491 kb on - strandat 379.495 kb on + strandat 379.495 kb on + strandat 379.495 kb on + strandat 379.496 kb on - strandat 379.544 kb on + strandat 379.544 kb on + strandat 379.544 kb on + strandat 379.544 kb on + strandat 379.545 kb on - strandat 379.545 kb on - strandat 379.649 kb on + strandat 379.649 kb on + strandat 379.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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377,640 + -0.6
377,640 + +0.5
377,641 - -2.1
377,641 - +0.0
377,748 - -0.2
377,748 - -0.5
377,749 + +1.6
377,749 + +1.9
377,772 - +0.7
377,779 + +0.0
377,780 - -1.1
377,780 - -1.9
378,070 + H281DRAFT_04259 0.20 -0.5
378,070 + H281DRAFT_04259 0.20 -2.5
378,071 - H281DRAFT_04259 0.21 +1.0
378,072 + H281DRAFT_04259 0.21 -0.3
378,072 + H281DRAFT_04259 0.21 -4.3
378,095 + H281DRAFT_04259 0.23 +0.2
378,225 + H281DRAFT_04259 0.34 -0.2
378,226 - H281DRAFT_04259 0.34 -0.8
378,341 + H281DRAFT_04259 0.44 -1.5
378,342 - H281DRAFT_04259 0.44 -0.8
378,342 - H281DRAFT_04259 0.44 -1.0
378,369 + H281DRAFT_04259 0.47 -3.2
378,369 + H281DRAFT_04259 0.47 -3.4
378,369 + H281DRAFT_04259 0.47 -2.6
378,369 + H281DRAFT_04259 0.47 -2.3
378,369 + H281DRAFT_04259 0.47 -1.3
378,369 + H281DRAFT_04259 0.47 -3.5
378,370 - H281DRAFT_04259 0.47 +0.7
378,370 - H281DRAFT_04259 0.47 -1.7
378,370 - H281DRAFT_04259 0.47 -2.0
378,370 - H281DRAFT_04259 0.47 -2.2
378,370 - H281DRAFT_04259 0.47 -1.2
378,372 + H281DRAFT_04259 0.47 -2.4
378,373 - H281DRAFT_04259 0.47 -0.8
378,373 - H281DRAFT_04259 0.47 -0.9
378,541 + H281DRAFT_04259 0.62 -2.4
378,541 + H281DRAFT_04259 0.62 -2.2
378,542 - H281DRAFT_04259 0.62 +0.4
378,542 - H281DRAFT_04259 0.62 -0.8
378,542 - H281DRAFT_04259 0.62 -0.0
378,724 + -0.6
378,725 - H281DRAFT_04259 0.78 +0.3
378,725 - H281DRAFT_04259 0.78 -1.2
378,725 - H281DRAFT_04259 0.78 -0.2
378,798 - H281DRAFT_04259 0.85 -1.2
378,798 - H281DRAFT_04259 0.85 +0.4
379,484 - +1.6
379,491 - +1.0
379,495 + -2.8
379,495 + +0.1
379,495 + +0.2
379,496 - -1.4
379,544 + -0.2
379,544 + +0.4
379,544 + -1.8
379,544 + -1.9
379,545 - +0.3
379,545 - +0.1
379,649 + +1.3
379,649 + -1.7
379,650 - -0.2

Or see this region's nucleotide sequence