Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04244

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04243 and H281DRAFT_04244 are separated by 110 nucleotidesH281DRAFT_04244 and H281DRAFT_04245 are separated by 83 nucleotides H281DRAFT_04243: H281DRAFT_04243 - magnesium and cobalt transporter, at 361,227 to 362,258 _04243 H281DRAFT_04244: H281DRAFT_04244 - apolipoprotein N-acyltransferase, at 362,369 to 364,087 _04244 H281DRAFT_04245: H281DRAFT_04245 - putative metalloprotease, at 364,171 to 364,932 _04245 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.549 kb on + strand, within H281DRAFT_04243at 361.647 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strandat 361.740 kb on + strand, within H281DRAFT_04243at 361.901 kb on + strand, within H281DRAFT_04243at 362.459 kb on + strandat 363.959 kb on - strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.086 kb on - strandat 364.151 kb on - strandat 364.151 kb on - strandat 364.151 kb on - strandat 364.188 kb on + strandat 364.242 kb on + strandat 364.242 kb on + strandat 364.243 kb on - strandat 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.337 kb on + strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.381 kb on - strand, within H281DRAFT_04245at 364.479 kb on - strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.541 kb on - strand, within H281DRAFT_04245at 364.587 kb on - strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.703 kb on - strand, within H281DRAFT_04245at 364.716 kb on - strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.908 kb on + strandat 364.909 kb on - strandat 364.951 kb on + strandat 364.952 kb on - strandat 364.972 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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361,377 + H281DRAFT_04243 0.15 -1.0
361,377 + H281DRAFT_04243 0.15 -1.6
361,377 + H281DRAFT_04243 0.15 -2.0
361,549 + H281DRAFT_04243 0.31 -2.6
361,647 + H281DRAFT_04243 0.41 -2.0
361,683 + H281DRAFT_04243 0.44 -2.5
361,683 + H281DRAFT_04243 0.44 +0.4
361,683 + H281DRAFT_04243 0.44 +0.4
361,683 + -1.0
361,740 + H281DRAFT_04243 0.50 -2.9
361,901 + H281DRAFT_04243 0.65 -2.4
362,459 + -0.1
363,959 - +0.4
364,085 + -0.1
364,085 + +0.4
364,085 + -0.1
364,085 + -0.8
364,085 + +0.4
364,085 + -0.4
364,086 - -0.1
364,151 - +0.4
364,151 - -0.4
364,151 - +0.5
364,188 + +0.8
364,242 + -0.2
364,242 + -1.4
364,243 - -1.5
364,261 + H281DRAFT_04245 0.12 -1.3
364,261 + H281DRAFT_04245 0.12 -1.2
364,261 + H281DRAFT_04245 0.12 -0.4
364,337 + H281DRAFT_04245 0.22 -0.6
364,338 - H281DRAFT_04245 0.22 -0.1
364,338 - H281DRAFT_04245 0.22 +0.1
364,381 - H281DRAFT_04245 0.28 -0.1
364,479 - H281DRAFT_04245 0.40 -0.0
364,503 + H281DRAFT_04245 0.44 -0.2
364,503 + H281DRAFT_04245 0.44 -0.3
364,503 + H281DRAFT_04245 0.44 +1.0
364,541 - H281DRAFT_04245 0.49 +5.7
364,587 - H281DRAFT_04245 0.55 -0.2
364,640 + H281DRAFT_04245 0.62 -2.0
364,640 + H281DRAFT_04245 0.62 -0.7
364,640 + H281DRAFT_04245 0.62 -0.3
364,640 + H281DRAFT_04245 0.62 -0.2
364,641 - H281DRAFT_04245 0.62 -0.4
364,641 - H281DRAFT_04245 0.62 -1.8
364,641 - H281DRAFT_04245 0.62 -0.2
364,641 - H281DRAFT_04245 0.62 -1.4
364,641 - H281DRAFT_04245 0.62 +1.3
364,641 - H281DRAFT_04245 0.62 +0.1
364,641 - H281DRAFT_04245 0.62 -2.1
364,649 + H281DRAFT_04245 0.63 -0.5
364,649 + H281DRAFT_04245 0.63 +0.7
364,649 + H281DRAFT_04245 0.63 -0.1
364,703 - H281DRAFT_04245 0.70 -0.4
364,716 - H281DRAFT_04245 0.72 -0.8
364,722 + H281DRAFT_04245 0.72 -0.3
364,722 + H281DRAFT_04245 0.72 +0.2
364,908 + -1.6
364,909 - +0.7
364,951 + +0.5
364,952 - +1.0
364,972 + -1.8

Or see this region's nucleotide sequence