Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04146

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04144 and H281DRAFT_04145 are separated by 112 nucleotidesH281DRAFT_04145 and H281DRAFT_04146 overlap by 4 nucleotidesH281DRAFT_04146 and H281DRAFT_04147 are separated by 46 nucleotides H281DRAFT_04144: H281DRAFT_04144 - Tryptophan 2,3-dioxygenase holoenzyme /Tryptophan 2,3-dioxygenase apoenzyme, at 253,869 to 254,810 _04144 H281DRAFT_04145: H281DRAFT_04145 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 254,923 to 255,660 _04145 H281DRAFT_04146: H281DRAFT_04146 - xylulokinase, at 255,657 to 257,201 _04146 H281DRAFT_04147: H281DRAFT_04147 - L-iditol 2-dehydrogenase, at 257,248 to 258,345 _04147 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 254.801 kb on + strandat 254.802 kb on - strandat 254.808 kb on + strandat 254.819 kb on + strandat 254.819 kb on + strandat 254.819 kb on + strandat 254.974 kb on - strandat 255.048 kb on + strand, within H281DRAFT_04145at 255.103 kb on - strand, within H281DRAFT_04145at 255.103 kb on - strand, within H281DRAFT_04145at 255.103 kb on - strand, within H281DRAFT_04145at 255.103 kb on - strand, within H281DRAFT_04145at 255.103 kb on - strand, within H281DRAFT_04145at 255.212 kb on + strand, within H281DRAFT_04145at 255.651 kb on + strandat 255.652 kb on - strandat 255.652 kb on - strandat 255.712 kb on + strandat 255.734 kb on - strandat 255.881 kb on - strand, within H281DRAFT_04146at 255.996 kb on + strand, within H281DRAFT_04146at 256.307 kb on - strand, within H281DRAFT_04146at 256.382 kb on - strand, within H281DRAFT_04146at 256.796 kb on - strand, within H281DRAFT_04146at 256.826 kb on - strand, within H281DRAFT_04146at 256.894 kb on - strand, within H281DRAFT_04146at 256.906 kb on + strand, within H281DRAFT_04146at 256.919 kb on + strand, within H281DRAFT_04146at 256.925 kb on + strand, within H281DRAFT_04146at 257.104 kb on + strandat 257.104 kb on + strandat 257.194 kb on + strandat 257.215 kb on - strandat 257.216 kb on + strandat 257.270 kb on - strandat 257.568 kb on + strand, within H281DRAFT_04147at 257.569 kb on - strand, within H281DRAFT_04147at 257.570 kb on + strand, within H281DRAFT_04147at 257.570 kb on + strand, within H281DRAFT_04147at 257.570 kb on + strand, within H281DRAFT_04147at 257.571 kb on - strand, within H281DRAFT_04147at 257.572 kb on + strand, within H281DRAFT_04147at 257.904 kb on + strand, within H281DRAFT_04147at 257.905 kb on - strand, within H281DRAFT_04147at 258.000 kb on - strand, within H281DRAFT_04147

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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254,801 + -0.8
254,802 - -0.5
254,808 + +0.2
254,819 + -0.5
254,819 + +0.0
254,819 + -1.3
254,974 - +1.2
255,048 + H281DRAFT_04145 0.17 +0.8
255,103 - H281DRAFT_04145 0.24 -1.3
255,103 - H281DRAFT_04145 0.24 -2.3
255,103 - H281DRAFT_04145 0.24 -1.4
255,103 - H281DRAFT_04145 0.24 -1.4
255,103 - H281DRAFT_04145 0.24 -1.0
255,212 + H281DRAFT_04145 0.39 -1.3
255,651 + -0.8
255,652 - -2.3
255,652 - -0.6
255,712 + +0.7
255,734 - +0.0
255,881 - H281DRAFT_04146 0.14 +0.0
255,996 + H281DRAFT_04146 0.22 -0.9
256,307 - H281DRAFT_04146 0.42 -0.1
256,382 - H281DRAFT_04146 0.47 +1.0
256,796 - H281DRAFT_04146 0.74 -2.0
256,826 - H281DRAFT_04146 0.76 -0.6
256,894 - H281DRAFT_04146 0.80 -0.1
256,906 + H281DRAFT_04146 0.81 +0.4
256,919 + H281DRAFT_04146 0.82 -1.3
256,925 + H281DRAFT_04146 0.82 -2.7
257,104 + -0.3
257,104 + -0.1
257,194 + -2.4
257,215 - +1.9
257,216 + +0.1
257,270 - +0.1
257,568 + H281DRAFT_04147 0.29 +0.3
257,569 - H281DRAFT_04147 0.29 -0.2
257,570 + H281DRAFT_04147 0.29 +0.5
257,570 + H281DRAFT_04147 0.29 -1.6
257,570 + H281DRAFT_04147 0.29 +0.5
257,571 - H281DRAFT_04147 0.29 -2.0
257,572 + H281DRAFT_04147 0.30 +0.3
257,904 + H281DRAFT_04147 0.60 +1.9
257,905 - H281DRAFT_04147 0.60 -0.2
258,000 - H281DRAFT_04147 0.68 -0.3

Or see this region's nucleotide sequence