Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03985

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03983 and H281DRAFT_03984 overlap by 26 nucleotidesH281DRAFT_03984 and H281DRAFT_03985 overlap by 17 nucleotidesH281DRAFT_03985 and H281DRAFT_03986 are separated by 639 nucleotides H281DRAFT_03983: H281DRAFT_03983 - acyl carrier protein, at 90,047 to 90,346 _03983 H281DRAFT_03984: H281DRAFT_03984 - 1-acyl-sn-glycerol-3-phosphate acyltransferases, at 90,321 to 91,115 _03984 H281DRAFT_03985: H281DRAFT_03985 - Beta-ketoacyl synthase, N-terminal domain, at 91,099 to 91,968 _03985 H281DRAFT_03986: H281DRAFT_03986 - Putative Ca2+/H+ antiporter, TMEM165/GDT1 family, at 92,608 to 93,225 _03986 Position (kb) 91 92Strain fitness (log2 ratio) -1 0 1 2 3at 90.323 kb on - strandat 90.366 kb on - strandat 90.659 kb on + strand, within H281DRAFT_03984at 90.660 kb on - strand, within H281DRAFT_03984at 90.660 kb on - strand, within H281DRAFT_03984at 90.660 kb on - strandat 90.661 kb on + strand, within H281DRAFT_03984at 90.725 kb on - strand, within H281DRAFT_03984at 90.832 kb on + strand, within H281DRAFT_03984at 90.832 kb on + strand, within H281DRAFT_03984at 90.850 kb on - strand, within H281DRAFT_03984at 91.096 kb on + strandat 91.285 kb on + strand, within H281DRAFT_03985at 91.538 kb on + strand, within H281DRAFT_03985at 91.821 kb on + strand, within H281DRAFT_03985at 91.822 kb on - strand, within H281DRAFT_03985at 91.864 kb on - strand, within H281DRAFT_03985at 91.922 kb on - strandat 91.969 kb on - strandat 91.969 kb on - strandat 91.969 kb on - strandat 92.027 kb on - strandat 92.027 kb on - strandat 92.061 kb on + strandat 92.066 kb on - strandat 92.066 kb on - strandat 92.090 kb on + strandat 92.090 kb on + strandat 92.091 kb on - strandat 92.125 kb on + strandat 92.163 kb on - strandat 92.210 kb on - strandat 92.213 kb on - strandat 92.250 kb on - strandat 92.253 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.360 kb on + strandat 92.419 kb on + strandat 92.420 kb on - strandat 92.420 kb on - strandat 92.766 kb on + strand, within H281DRAFT_03986at 92.875 kb on - strand, within H281DRAFT_03986at 92.922 kb on - strand, within H281DRAFT_03986

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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90,323 - -1.5
90,366 - -0.1
90,659 + H281DRAFT_03984 0.43 +1.9
90,660 - H281DRAFT_03984 0.43 +0.1
90,660 - H281DRAFT_03984 0.43 +0.2
90,660 - +1.0
90,661 + H281DRAFT_03984 0.43 +0.1
90,725 - H281DRAFT_03984 0.51 -0.9
90,832 + H281DRAFT_03984 0.64 -0.2
90,832 + H281DRAFT_03984 0.64 -0.8
90,850 - H281DRAFT_03984 0.67 +0.1
91,096 + +1.1
91,285 + H281DRAFT_03985 0.21 -0.5
91,538 + H281DRAFT_03985 0.50 -0.6
91,821 + H281DRAFT_03985 0.83 +0.0
91,822 - H281DRAFT_03985 0.83 -0.3
91,864 - H281DRAFT_03985 0.88 +1.0
91,922 - -0.2
91,969 - -0.0
91,969 - +0.2
91,969 - -0.5
92,027 - -0.3
92,027 - +0.3
92,061 + +1.1
92,066 - +1.0
92,066 - +1.5
92,090 + +0.3
92,090 + -0.5
92,091 - +0.0
92,125 + -0.5
92,163 - +0.9
92,210 - +1.2
92,213 - +0.6
92,250 - +1.4
92,253 + +1.5
92,301 + +0.4
92,301 + -0.6
92,301 + -1.5
92,301 + -0.7
92,360 + +0.9
92,419 + +0.5
92,420 - +3.0
92,420 - +0.9
92,766 + H281DRAFT_03986 0.26 -0.8
92,875 - H281DRAFT_03986 0.43 +0.2
92,922 - H281DRAFT_03986 0.51 +0.2

Or see this region's nucleotide sequence