Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03753

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03752 and H281DRAFT_03753 are separated by 276 nucleotidesH281DRAFT_03753 and H281DRAFT_03754 are separated by 73 nucleotides H281DRAFT_03752: H281DRAFT_03752 - transcriptional regulator, IclR family, at 267,977 to 268,834 _03752 H281DRAFT_03753: H281DRAFT_03753 - Glyoxylase, beta-lactamase superfamily II, at 269,111 to 270,070 _03753 H281DRAFT_03754: H281DRAFT_03754 - 3-(3-hydroxy-phenyl)propionate hydroxylase, at 270,144 to 271,862 _03754 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1at 268.327 kb on - strand, within H281DRAFT_03752at 268.420 kb on - strand, within H281DRAFT_03752at 268.469 kb on - strand, within H281DRAFT_03752at 268.636 kb on - strandat 269.009 kb on + strandat 269.010 kb on - strandat 269.330 kb on + strand, within H281DRAFT_03753at 269.348 kb on + strand, within H281DRAFT_03753at 269.676 kb on - strand, within H281DRAFT_03753at 270.084 kb on - strandat 270.084 kb on - strandat 270.156 kb on + strandat 270.322 kb on + strand, within H281DRAFT_03754at 270.477 kb on + strand, within H281DRAFT_03754at 270.711 kb on + strand, within H281DRAFT_03754at 270.711 kb on + strand, within H281DRAFT_03754at 270.712 kb on - strand, within H281DRAFT_03754

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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268,327 - H281DRAFT_03752 0.41 +1.0
268,420 - H281DRAFT_03752 0.52 +0.5
268,469 - H281DRAFT_03752 0.57 +0.8
268,636 - -0.3
269,009 + -1.0
269,010 - -2.7
269,330 + H281DRAFT_03753 0.23 -1.0
269,348 + H281DRAFT_03753 0.25 +0.5
269,676 - H281DRAFT_03753 0.59 -1.1
270,084 - -0.4
270,084 - +1.5
270,156 + +0.3
270,322 + H281DRAFT_03754 0.10 -0.7
270,477 + H281DRAFT_03754 0.19 +0.3
270,711 + H281DRAFT_03754 0.33 -2.1
270,711 + H281DRAFT_03754 0.33 -0.2
270,712 - H281DRAFT_03754 0.33 +0.2

Or see this region's nucleotide sequence