Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03574

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03573 and H281DRAFT_03574 are separated by 347 nucleotidesH281DRAFT_03574 and H281DRAFT_03575 are separated by 85 nucleotides H281DRAFT_03573: H281DRAFT_03573 - DNA-binding transcriptional regulator, LysR family, at 81,011 to 81,949 _03573 H281DRAFT_03574: H281DRAFT_03574 - transcriptional regulator, AraC family with amidase-like domain, at 82,297 to 83,259 _03574 H281DRAFT_03575: H281DRAFT_03575 - hypothetical protein, at 83,345 to 84,103 _03575 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1at 81.307 kb on + strand, within H281DRAFT_03573at 81.307 kb on + strand, within H281DRAFT_03573at 81.489 kb on - strand, within H281DRAFT_03573at 81.648 kb on + strand, within H281DRAFT_03573at 81.885 kb on + strandat 81.886 kb on - strandat 81.913 kb on + strandat 81.914 kb on - strandat 81.978 kb on + strandat 81.979 kb on - strandat 82.129 kb on + strandat 82.129 kb on + strandat 82.130 kb on - strandat 82.610 kb on - strand, within H281DRAFT_03574at 82.735 kb on + strand, within H281DRAFT_03574at 82.912 kb on + strand, within H281DRAFT_03574at 82.992 kb on + strand, within H281DRAFT_03574at 83.145 kb on - strand, within H281DRAFT_03574at 83.145 kb on - strand, within H281DRAFT_03574at 83.310 kb on + strandat 83.452 kb on - strand, within H281DRAFT_03575at 83.499 kb on + strand, within H281DRAFT_03575at 83.500 kb on - strand, within H281DRAFT_03575at 83.808 kb on - strand, within H281DRAFT_03575at 84.036 kb on - strandat 84.043 kb on + strandat 84.044 kb on - strandat 84.207 kb on - strandat 84.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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81,307 + H281DRAFT_03573 0.32 -1.7
81,307 + H281DRAFT_03573 0.32 +0.7
81,489 - H281DRAFT_03573 0.51 +0.6
81,648 + H281DRAFT_03573 0.68 +1.3
81,885 + -2.8
81,886 - +0.7
81,913 + -0.1
81,914 - -0.0
81,978 + +0.1
81,979 - -1.1
82,129 + +0.6
82,129 + -0.1
82,130 - -0.8
82,610 - H281DRAFT_03574 0.33 +0.9
82,735 + H281DRAFT_03574 0.45 -2.2
82,912 + H281DRAFT_03574 0.64 +0.8
82,992 + H281DRAFT_03574 0.72 -3.0
83,145 - H281DRAFT_03574 0.88 +0.7
83,145 - H281DRAFT_03574 0.88 -1.6
83,310 + +0.3
83,452 - H281DRAFT_03575 0.14 +1.0
83,499 + H281DRAFT_03575 0.20 +0.8
83,500 - H281DRAFT_03575 0.20 +0.7
83,808 - H281DRAFT_03575 0.61 -0.6
84,036 - +0.7
84,043 + +1.6
84,044 - +0.1
84,207 - -0.5
84,207 - -0.5

Or see this region's nucleotide sequence