Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03471

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03470 and H281DRAFT_03471 overlap by 4 nucleotidesH281DRAFT_03471 and H281DRAFT_03472 are separated by 349 nucleotidesH281DRAFT_03472 and H281DRAFT_03473 are separated by 154 nucleotides H281DRAFT_03470: H281DRAFT_03470 - kumamolisin. Serine peptidase. MEROPS family S53, at 552,941 to 554,560 _03470 H281DRAFT_03471: H281DRAFT_03471 - Carboxypeptidase C (cathepsin A), at 554,557 to 556,212 _03471 H281DRAFT_03472: H281DRAFT_03472 - hypothetical protein, at 556,562 to 557,014 _03472 H281DRAFT_03473: H281DRAFT_03473 - hypothetical protein, at 557,169 to 557,528 _03473 Position (kb) 554 555 556 557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 553.586 kb on + strand, within H281DRAFT_03470at 553.586 kb on + strand, within H281DRAFT_03470at 553.691 kb on - strand, within H281DRAFT_03470at 554.007 kb on - strand, within H281DRAFT_03470at 554.007 kb on - strand, within H281DRAFT_03470at 554.010 kb on + strand, within H281DRAFT_03470at 554.011 kb on - strand, within H281DRAFT_03470at 554.372 kb on + strand, within H281DRAFT_03470at 554.373 kb on - strand, within H281DRAFT_03470at 554.374 kb on + strand, within H281DRAFT_03470at 554.375 kb on - strand, within H281DRAFT_03470at 554.496 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.498 kb on + strandat 554.499 kb on - strandat 554.499 kb on - strandat 554.499 kb on - strandat 554.499 kb on - strandat 554.499 kb on - strandat 554.500 kb on + strandat 554.500 kb on + strandat 554.500 kb on + strandat 554.500 kb on + strandat 554.500 kb on + strandat 554.501 kb on - strandat 554.501 kb on - strandat 554.501 kb on - strandat 554.683 kb on + strandat 554.776 kb on + strand, within H281DRAFT_03471at 554.777 kb on - strand, within H281DRAFT_03471at 554.845 kb on + strand, within H281DRAFT_03471at 554.846 kb on - strand, within H281DRAFT_03471at 554.902 kb on + strand, within H281DRAFT_03471at 554.903 kb on - strand, within H281DRAFT_03471at 554.903 kb on - strand, within H281DRAFT_03471at 555.011 kb on + strand, within H281DRAFT_03471at 555.012 kb on - strand, within H281DRAFT_03471at 555.220 kb on + strand, within H281DRAFT_03471at 555.234 kb on + strand, within H281DRAFT_03471at 555.289 kb on - strand, within H281DRAFT_03471at 555.289 kb on - strand, within H281DRAFT_03471at 555.593 kb on + strand, within H281DRAFT_03471at 555.640 kb on + strand, within H281DRAFT_03471at 555.739 kb on + strand, within H281DRAFT_03471at 555.760 kb on + strand, within H281DRAFT_03471at 555.760 kb on + strand, within H281DRAFT_03471at 555.781 kb on + strand, within H281DRAFT_03471at 555.782 kb on - strand, within H281DRAFT_03471at 555.899 kb on + strand, within H281DRAFT_03471at 555.899 kb on + strand, within H281DRAFT_03471at 555.899 kb on + strand, within H281DRAFT_03471at 555.901 kb on + strand, within H281DRAFT_03471at 555.901 kb on + strand, within H281DRAFT_03471at 555.994 kb on + strand, within H281DRAFT_03471at 555.994 kb on + strand, within H281DRAFT_03471at 555.995 kb on - strand, within H281DRAFT_03471at 556.141 kb on + strandat 556.141 kb on + strandat 556.179 kb on + strandat 556.211 kb on - strandat 556.346 kb on + strandat 556.428 kb on + strandat 556.428 kb on + strandat 556.428 kb on + strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.429 kb on - strandat 556.432 kb on + strandat 556.433 kb on - strandat 556.606 kb on - strandat 556.620 kb on - strand, within H281DRAFT_03472at 557.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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553,586 + H281DRAFT_03470 0.40 -3.2
553,586 + H281DRAFT_03470 0.40 -1.8
553,691 - H281DRAFT_03470 0.46 -2.6
554,007 - H281DRAFT_03470 0.66 -0.5
554,007 - H281DRAFT_03470 0.66 +0.6
554,010 + H281DRAFT_03470 0.66 -0.1
554,011 - H281DRAFT_03470 0.66 +0.5
554,372 + H281DRAFT_03470 0.88 -0.0
554,373 - H281DRAFT_03470 0.88 +1.8
554,374 + H281DRAFT_03470 0.88 -2.3
554,375 - H281DRAFT_03470 0.89 -0.2
554,496 + -1.0
554,498 + -0.8
554,498 + -1.3
554,498 + +0.1
554,498 + -2.1
554,498 + +0.0
554,498 + -1.0
554,498 + -0.0
554,499 - +0.2
554,499 - -2.4
554,499 - -0.5
554,499 - +0.8
554,499 - -1.1
554,500 + -0.7
554,500 + +1.0
554,500 + -1.7
554,500 + -1.2
554,500 + -2.1
554,501 - +1.0
554,501 - +1.5
554,501 - +0.1
554,683 + +0.5
554,776 + H281DRAFT_03471 0.13 +1.6
554,777 - H281DRAFT_03471 0.13 +0.0
554,845 + H281DRAFT_03471 0.17 +1.3
554,846 - H281DRAFT_03471 0.17 +0.2
554,902 + H281DRAFT_03471 0.21 +0.9
554,903 - H281DRAFT_03471 0.21 +0.5
554,903 - H281DRAFT_03471 0.21 +0.7
555,011 + H281DRAFT_03471 0.27 -1.6
555,012 - H281DRAFT_03471 0.27 +0.6
555,220 + H281DRAFT_03471 0.40 +0.7
555,234 + H281DRAFT_03471 0.41 +0.0
555,289 - H281DRAFT_03471 0.44 -0.6
555,289 - H281DRAFT_03471 0.44 +1.0
555,593 + H281DRAFT_03471 0.63 +0.3
555,640 + H281DRAFT_03471 0.65 -0.4
555,739 + H281DRAFT_03471 0.71 -3.6
555,760 + H281DRAFT_03471 0.73 -1.2
555,760 + H281DRAFT_03471 0.73 -2.6
555,781 + H281DRAFT_03471 0.74 -4.4
555,782 - H281DRAFT_03471 0.74 +0.2
555,899 + H281DRAFT_03471 0.81 -3.3
555,899 + H281DRAFT_03471 0.81 -3.0
555,899 + H281DRAFT_03471 0.81 -1.7
555,901 + H281DRAFT_03471 0.81 -2.6
555,901 + H281DRAFT_03471 0.81 -2.7
555,994 + H281DRAFT_03471 0.87 -3.5
555,994 + H281DRAFT_03471 0.87 -2.7
555,995 - H281DRAFT_03471 0.87 -0.2
556,141 + -2.4
556,141 + -1.8
556,179 + -3.4
556,211 - -0.5
556,346 + -2.3
556,428 + +2.7
556,428 + +0.8
556,428 + +3.0
556,429 - +2.1
556,429 - +3.0
556,429 - +3.2
556,429 - +2.8
556,429 - +2.3
556,429 - +2.4
556,429 - +2.0
556,432 + +1.0
556,433 - +3.4
556,606 - +2.7
556,620 - H281DRAFT_03472 0.13 +2.9
557,152 - +1.5

Or see this region's nucleotide sequence