Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02849

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02848 and H281DRAFT_02849 are separated by 195 nucleotidesH281DRAFT_02849 and H281DRAFT_02850 are separated by 134 nucleotidesH281DRAFT_02850 and H281DRAFT_02851 overlap by 4 nucleotides H281DRAFT_02848: H281DRAFT_02848 - Fe-S-cluster containining protein, at 441,098 to 442,000 _02848 H281DRAFT_02849: H281DRAFT_02849 - Pimeloyl-ACP methyl ester carboxylesterase, at 442,196 to 443,350 _02849 H281DRAFT_02850: H281DRAFT_02850 - holin-like protein, at 443,485 to 443,856 _02850 H281DRAFT_02851: H281DRAFT_02851 - TIGR00659 family protein, at 443,853 to 444,593 _02851 Position (kb) 442 443 444Strain fitness (log2 ratio) -2 -1 0 1at 441.404 kb on - strand, within H281DRAFT_02848at 441.687 kb on + strand, within H281DRAFT_02848at 442.129 kb on + strandat 442.197 kb on + strandat 442.432 kb on - strand, within H281DRAFT_02849at 442.471 kb on - strand, within H281DRAFT_02849at 442.479 kb on - strand, within H281DRAFT_02849at 443.060 kb on - strand, within H281DRAFT_02849at 443.060 kb on - strand, within H281DRAFT_02849at 443.200 kb on - strand, within H281DRAFT_02849at 443.434 kb on + strandat 443.445 kb on + strandat 443.483 kb on - strandat 443.511 kb on + strandat 444.340 kb on + strand, within H281DRAFT_02851

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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441,404 - H281DRAFT_02848 0.34 -0.1
441,687 + H281DRAFT_02848 0.65 +0.2
442,129 + -2.0
442,197 + +0.6
442,432 - H281DRAFT_02849 0.20 -1.6
442,471 - H281DRAFT_02849 0.24 -1.0
442,479 - H281DRAFT_02849 0.25 -0.6
443,060 - H281DRAFT_02849 0.75 -0.6
443,060 - H281DRAFT_02849 0.75 -0.2
443,200 - H281DRAFT_02849 0.87 -0.9
443,434 + +1.3
443,445 + +0.4
443,483 - -0.5
443,511 + -0.9
444,340 + H281DRAFT_02851 0.66 +1.1

Or see this region's nucleotide sequence