Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02728

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02727 and H281DRAFT_02728 are separated by 11 nucleotidesH281DRAFT_02728 and H281DRAFT_02729 are separated by 3 nucleotides H281DRAFT_02727: H281DRAFT_02727 - transcriptional regulator, LysR family, at 313,293 to 314,216 _02727 H281DRAFT_02728: H281DRAFT_02728 - Uncharacterized conserved protein, DUF1501 family, at 314,228 to 315,376 _02728 H281DRAFT_02729: H281DRAFT_02729 - Uncharacterized conserved protein, DUF1800 family, at 315,380 to 316,915 _02729 Position (kb) 314 315 316Strain fitness (log2 ratio) -1 0 1at 313.231 kb on - strandat 313.314 kb on + strandat 313.315 kb on - strandat 313.459 kb on + strand, within H281DRAFT_02727at 313.727 kb on - strand, within H281DRAFT_02727at 313.959 kb on + strand, within H281DRAFT_02727at 313.960 kb on - strand, within H281DRAFT_02727at 314.229 kb on + strandat 314.874 kb on + strand, within H281DRAFT_02728at 315.381 kb on + strandat 315.601 kb on + strand, within H281DRAFT_02729at 316.213 kb on + strand, within H281DRAFT_02729

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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313,231 - +0.4
313,314 + +0.4
313,315 - +0.1
313,459 + H281DRAFT_02727 0.18 +0.8
313,727 - H281DRAFT_02727 0.47 -0.7
313,959 + H281DRAFT_02727 0.72 +0.0
313,960 - H281DRAFT_02727 0.72 -1.2
314,229 + -1.1
314,874 + H281DRAFT_02728 0.56 +0.6
315,381 + -0.6
315,601 + H281DRAFT_02729 0.14 +1.5
316,213 + H281DRAFT_02729 0.54 +0.3

Or see this region's nucleotide sequence