Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02464

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02463 and H281DRAFT_02464 are separated by 10 nucleotidesH281DRAFT_02464 and H281DRAFT_02465 are separated by 45 nucleotidesH281DRAFT_02465 and H281DRAFT_02466 are separated by 238 nucleotides H281DRAFT_02463: H281DRAFT_02463 - choline dehydrogenase, at 30,483 to 32,168 _02463 H281DRAFT_02464: H281DRAFT_02464 - betaine aldehyde dehydrogenase, at 32,179 to 33,648 _02464 H281DRAFT_02465: H281DRAFT_02465 - transcriptional regulator, TetR family, at 33,694 to 34,287 _02465 H281DRAFT_02466: H281DRAFT_02466 - glutathione-independent formaldehyde dehydrogenase, at 34,526 to 35,725 _02466 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.222 kb on + strand, within H281DRAFT_02463at 31.223 kb on - strand, within H281DRAFT_02463at 31.258 kb on + strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.981 kb on + strand, within H281DRAFT_02463at 32.045 kb on - strandat 32.045 kb on - strandat 32.147 kb on - strandat 32.147 kb on - strandat 32.235 kb on - strandat 32.325 kb on + strandat 32.326 kb on - strand, within H281DRAFT_02464at 32.326 kb on - strand, within H281DRAFT_02464at 32.763 kb on + strand, within H281DRAFT_02464at 32.763 kb on + strand, within H281DRAFT_02464at 32.764 kb on - strand, within H281DRAFT_02464at 33.075 kb on - strand, within H281DRAFT_02464at 33.306 kb on - strand, within H281DRAFT_02464at 33.605 kb on + strandat 33.605 kb on + strandat 33.606 kb on - strandat 33.606 kb on - strandat 33.621 kb on - strandat 33.749 kb on - strandat 33.912 kb on - strand, within H281DRAFT_02465at 33.912 kb on - strand, within H281DRAFT_02465at 33.912 kb on - strand, within H281DRAFT_02465at 34.143 kb on - strand, within H281DRAFT_02465at 34.381 kb on + strandat 34.550 kb on + strandat 34.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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31,222 + H281DRAFT_02463 0.44 +0.6
31,223 - H281DRAFT_02463 0.44 +0.3
31,258 + H281DRAFT_02463 0.46 +1.2
31,259 - H281DRAFT_02463 0.46 +0.0
31,259 - H281DRAFT_02463 0.46 -1.1
31,259 - H281DRAFT_02463 0.46 +2.0
31,874 - H281DRAFT_02463 0.83 -1.1
31,874 - H281DRAFT_02463 0.83 -1.6
31,874 - H281DRAFT_02463 0.83 -0.6
31,981 + H281DRAFT_02463 0.89 -0.5
32,045 - +0.8
32,045 - +0.6
32,147 - -0.6
32,147 - -0.1
32,235 - +0.9
32,325 + -1.7
32,326 - H281DRAFT_02464 0.10 +0.8
32,326 - H281DRAFT_02464 0.10 -1.7
32,763 + H281DRAFT_02464 0.40 -1.5
32,763 + H281DRAFT_02464 0.40 -0.9
32,764 - H281DRAFT_02464 0.40 +0.3
33,075 - H281DRAFT_02464 0.61 -2.3
33,306 - H281DRAFT_02464 0.77 -1.8
33,605 + -0.5
33,605 + -0.6
33,606 - +0.7
33,606 - -0.8
33,621 - +0.3
33,749 - +0.1
33,912 - H281DRAFT_02465 0.37 -0.5
33,912 - H281DRAFT_02465 0.37 -2.6
33,912 - H281DRAFT_02465 0.37 +0.1
34,143 - H281DRAFT_02465 0.76 -0.2
34,381 + +1.2
34,550 + -1.3
34,551 - -0.4

Or see this region's nucleotide sequence