Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02404

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02402 and H281DRAFT_02403 are separated by 386 nucleotidesH281DRAFT_02403 and H281DRAFT_02404 are separated by 303 nucleotidesH281DRAFT_02404 and H281DRAFT_02405 are separated by 169 nucleotides H281DRAFT_02402: H281DRAFT_02402 - replication restart DNA helicase PriA, at 567,691 to 569,937 _02402 H281DRAFT_02403: H281DRAFT_02403 - hypothetical protein, at 570,324 to 570,494 _02403 H281DRAFT_02404: H281DRAFT_02404 - L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase, at 570,798 to 574,736 _02404 H281DRAFT_02405: H281DRAFT_02405 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 574,906 to 576,054 _02405 Position (kb) 570 571 572 573 574 575Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 569.932 kb on - strandat 569.996 kb on - strandat 570.046 kb on + strandat 570.046 kb on + strandat 570.046 kb on + strandat 570.046 kb on + strandat 570.047 kb on - strandat 570.047 kb on - strandat 570.047 kb on - strandat 570.047 kb on - strandat 570.163 kb on + strandat 570.163 kb on + strandat 570.164 kb on - strandat 570.432 kb on - strand, within H281DRAFT_02403at 570.474 kb on + strand, within H281DRAFT_02403at 570.475 kb on - strand, within H281DRAFT_02403at 570.548 kb on + strandat 570.549 kb on - strandat 570.549 kb on - strandat 570.558 kb on - strandat 570.558 kb on - strandat 570.559 kb on + strandat 570.619 kb on - strandat 571.218 kb on - strand, within H281DRAFT_02404at 571.218 kb on - strand, within H281DRAFT_02404at 571.218 kb on - strand, within H281DRAFT_02404at 571.218 kb on - strand, within H281DRAFT_02404at 571.611 kb on + strand, within H281DRAFT_02404at 571.633 kb on - strand, within H281DRAFT_02404at 571.686 kb on + strand, within H281DRAFT_02404at 571.686 kb on + strand, within H281DRAFT_02404at 571.689 kb on + strand, within H281DRAFT_02404at 571.689 kb on + strand, within H281DRAFT_02404at 571.689 kb on + strand, within H281DRAFT_02404at 571.698 kb on + strand, within H281DRAFT_02404at 571.698 kb on + strand, within H281DRAFT_02404at 571.699 kb on - strand, within H281DRAFT_02404at 571.750 kb on - strand, within H281DRAFT_02404at 571.750 kb on - strand, within H281DRAFT_02404at 571.750 kb on - strand, within H281DRAFT_02404at 571.750 kb on - strand, within H281DRAFT_02404at 571.876 kb on - strand, within H281DRAFT_02404at 572.034 kb on + strand, within H281DRAFT_02404at 572.034 kb on + strand, within H281DRAFT_02404at 572.035 kb on - strand, within H281DRAFT_02404at 572.035 kb on - strand, within H281DRAFT_02404at 572.097 kb on + strand, within H281DRAFT_02404at 572.098 kb on - strand, within H281DRAFT_02404at 572.169 kb on + strand, within H281DRAFT_02404at 572.169 kb on + strand, within H281DRAFT_02404at 572.170 kb on - strand, within H281DRAFT_02404at 572.170 kb on - strand, within H281DRAFT_02404at 572.171 kb on + strand, within H281DRAFT_02404at 572.184 kb on + strand, within H281DRAFT_02404at 572.274 kb on + strand, within H281DRAFT_02404at 572.274 kb on + strand, within H281DRAFT_02404at 572.275 kb on - strandat 572.295 kb on + strand, within H281DRAFT_02404at 572.295 kb on + strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.296 kb on - strand, within H281DRAFT_02404at 572.310 kb on + strand, within H281DRAFT_02404at 572.311 kb on - strand, within H281DRAFT_02404at 572.406 kb on + strand, within H281DRAFT_02404at 572.406 kb on + strand, within H281DRAFT_02404at 572.406 kb on + strand, within H281DRAFT_02404at 572.407 kb on - strand, within H281DRAFT_02404at 572.442 kb on + strand, within H281DRAFT_02404at 572.443 kb on - strand, within H281DRAFT_02404at 572.887 kb on + strand, within H281DRAFT_02404at 572.945 kb on + strand, within H281DRAFT_02404at 572.945 kb on + strand, within H281DRAFT_02404at 572.946 kb on - strand, within H281DRAFT_02404at 572.946 kb on - strand, within H281DRAFT_02404at 572.946 kb on - strand, within H281DRAFT_02404at 572.946 kb on - strand, within H281DRAFT_02404at 572.946 kb on - strand, within H281DRAFT_02404at 573.036 kb on + strand, within H281DRAFT_02404at 573.037 kb on - strand, within H281DRAFT_02404at 573.101 kb on + strand, within H281DRAFT_02404at 573.102 kb on - strand, within H281DRAFT_02404at 573.102 kb on - strand, within H281DRAFT_02404at 573.102 kb on - strand, within H281DRAFT_02404at 573.849 kb on + strand, within H281DRAFT_02404at 573.923 kb on + strand, within H281DRAFT_02404at 573.981 kb on + strand, within H281DRAFT_02404at 573.982 kb on - strand, within H281DRAFT_02404at 574.077 kb on + strand, within H281DRAFT_02404at 574.077 kb on + strand, within H281DRAFT_02404at 574.078 kb on - strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.150 kb on + strand, within H281DRAFT_02404at 574.151 kb on - strand, within H281DRAFT_02404at 574.268 kb on + strand, within H281DRAFT_02404at 574.268 kb on + strand, within H281DRAFT_02404at 574.269 kb on - strand, within H281DRAFT_02404at 574.323 kb on + strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.356 kb on - strandat 574.482 kb on + strandat 574.482 kb on + strandat 574.647 kb on + strandat 574.709 kb on + strandat 574.709 kb on + strandat 574.840 kb on + strandat 574.840 kb on + strandat 574.841 kb on - strandat 574.905 kb on + strandat 574.905 kb on + strandat 574.905 kb on + strandat 574.906 kb on - strandat 574.987 kb on - strandat 574.987 kb on - strandat 574.987 kb on - strandat 574.997 kb on + strandat 574.997 kb on + strandat 575.263 kb on + strand, within H281DRAFT_02405at 575.263 kb on + strandat 575.263 kb on + strand, within H281DRAFT_02405at 575.311 kb on + strand, within H281DRAFT_02405at 575.444 kb on - strand, within H281DRAFT_02405at 575.444 kb on - strand, within H281DRAFT_02405at 575.515 kb on + strand, within H281DRAFT_02405at 575.515 kb on + strand, within H281DRAFT_02405at 575.516 kb on - strand, within H281DRAFT_02405at 575.587 kb on + strand, within H281DRAFT_02405at 575.591 kb on - strand, within H281DRAFT_02405

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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569,932 - -1.5
569,996 - +0.4
570,046 + -0.3
570,046 + +0.6
570,046 + +0.2
570,046 + -0.0
570,047 - +0.8
570,047 - +0.4
570,047 - +0.2
570,047 - -0.4
570,163 + +1.3
570,163 + +0.3
570,164 - -0.2
570,432 - H281DRAFT_02403 0.63 +0.2
570,474 + H281DRAFT_02403 0.88 -0.2
570,475 - H281DRAFT_02403 0.88 +1.5
570,548 + +0.6
570,549 - -0.6
570,549 - +0.4
570,558 - +0.3
570,558 - -0.5
570,559 + +0.2
570,619 - -0.8
571,218 - H281DRAFT_02404 0.11 -1.4
571,218 - H281DRAFT_02404 0.11 -2.3
571,218 - H281DRAFT_02404 0.11 -1.0
571,218 - H281DRAFT_02404 0.11 -2.2
571,611 + H281DRAFT_02404 0.21 -2.9
571,633 - H281DRAFT_02404 0.21 -2.6
571,686 + H281DRAFT_02404 0.23 -1.6
571,686 + H281DRAFT_02404 0.23 -3.8
571,689 + H281DRAFT_02404 0.23 -2.3
571,689 + H281DRAFT_02404 0.23 -2.6
571,689 + H281DRAFT_02404 0.23 -0.5
571,698 + H281DRAFT_02404 0.23 -0.6
571,698 + H281DRAFT_02404 0.23 -1.2
571,699 - H281DRAFT_02404 0.23 -0.5
571,750 - H281DRAFT_02404 0.24 -0.6
571,750 - H281DRAFT_02404 0.24 -3.5
571,750 - H281DRAFT_02404 0.24 -2.9
571,750 - H281DRAFT_02404 0.24 -3.2
571,876 - H281DRAFT_02404 0.27 -1.2
572,034 + H281DRAFT_02404 0.31 +0.2
572,034 + H281DRAFT_02404 0.31 -1.3
572,035 - H281DRAFT_02404 0.31 -3.0
572,035 - H281DRAFT_02404 0.31 -2.2
572,097 + H281DRAFT_02404 0.33 -2.9
572,098 - H281DRAFT_02404 0.33 +1.3
572,169 + H281DRAFT_02404 0.35 -0.9
572,169 + H281DRAFT_02404 0.35 -1.6
572,170 - H281DRAFT_02404 0.35 +1.0
572,170 - H281DRAFT_02404 0.35 -1.9
572,171 + H281DRAFT_02404 0.35 -1.3
572,184 + H281DRAFT_02404 0.35 -3.4
572,274 + H281DRAFT_02404 0.37 -1.0
572,274 + H281DRAFT_02404 0.37 -1.6
572,275 - -0.6
572,295 + H281DRAFT_02404 0.38 -4.4
572,295 + H281DRAFT_02404 0.38 -2.7
572,296 - H281DRAFT_02404 0.38 -3.7
572,296 - H281DRAFT_02404 0.38 -2.8
572,296 - H281DRAFT_02404 0.38 -2.5
572,296 - H281DRAFT_02404 0.38 -1.7
572,296 - H281DRAFT_02404 0.38 -1.7
572,296 - H281DRAFT_02404 0.38 -1.4
572,310 + H281DRAFT_02404 0.38 -2.6
572,311 - H281DRAFT_02404 0.38 -1.0
572,406 + H281DRAFT_02404 0.41 -1.2
572,406 + H281DRAFT_02404 0.41 -3.6
572,406 + H281DRAFT_02404 0.41 -3.4
572,407 - H281DRAFT_02404 0.41 -1.3
572,442 + H281DRAFT_02404 0.42 -1.0
572,443 - H281DRAFT_02404 0.42 -1.7
572,887 + H281DRAFT_02404 0.53 -2.2
572,945 + H281DRAFT_02404 0.55 -0.3
572,945 + H281DRAFT_02404 0.55 +1.0
572,946 - H281DRAFT_02404 0.55 -2.7
572,946 - H281DRAFT_02404 0.55 -3.0
572,946 - H281DRAFT_02404 0.55 -2.7
572,946 - H281DRAFT_02404 0.55 -2.7
572,946 - H281DRAFT_02404 0.55 -3.1
573,036 + H281DRAFT_02404 0.57 -2.6
573,037 - H281DRAFT_02404 0.57 -1.3
573,101 + H281DRAFT_02404 0.58 -3.2
573,102 - H281DRAFT_02404 0.58 -0.3
573,102 - H281DRAFT_02404 0.58 -3.0
573,102 - H281DRAFT_02404 0.58 -2.7
573,849 + H281DRAFT_02404 0.77 -0.0
573,923 + H281DRAFT_02404 0.79 +1.1
573,981 + H281DRAFT_02404 0.81 -0.2
573,982 - H281DRAFT_02404 0.81 -0.8
574,077 + H281DRAFT_02404 0.83 +0.3
574,077 + H281DRAFT_02404 0.83 +0.5
574,078 - H281DRAFT_02404 0.83 -2.1
574,144 + H281DRAFT_02404 0.85 -0.7
574,144 + H281DRAFT_02404 0.85 -2.4
574,144 + H281DRAFT_02404 0.85 -0.1
574,144 + H281DRAFT_02404 0.85 -0.4
574,145 - H281DRAFT_02404 0.85 -1.9
574,145 - H281DRAFT_02404 0.85 -1.9
574,145 - H281DRAFT_02404 0.85 -3.2
574,145 - H281DRAFT_02404 0.85 +0.4
574,145 - H281DRAFT_02404 0.85 -1.7
574,145 - H281DRAFT_02404 0.85 +0.0
574,150 + H281DRAFT_02404 0.85 -0.3
574,151 - H281DRAFT_02404 0.85 -1.7
574,268 + H281DRAFT_02404 0.88 -0.1
574,268 + H281DRAFT_02404 0.88 -0.6
574,269 - H281DRAFT_02404 0.88 -0.2
574,323 + H281DRAFT_02404 0.89 -1.7
574,324 - H281DRAFT_02404 0.90 -1.9
574,324 - H281DRAFT_02404 0.90 -3.2
574,324 - H281DRAFT_02404 0.90 -1.2
574,324 - H281DRAFT_02404 0.90 -2.9
574,356 - -2.7
574,482 + -1.0
574,482 + -0.5
574,647 + +1.1
574,709 + -0.2
574,709 + -0.3
574,840 + -2.0
574,840 + -1.3
574,841 - +0.2
574,905 + -2.0
574,905 + -1.1
574,905 + -0.0
574,906 - -1.4
574,987 - -1.8
574,987 - -1.8
574,987 - -3.4
574,997 + -0.6
574,997 + -3.0
575,263 + H281DRAFT_02405 0.31 -0.6
575,263 + -0.3
575,263 + H281DRAFT_02405 0.31 -2.0
575,311 + H281DRAFT_02405 0.35 +1.1
575,444 - H281DRAFT_02405 0.47 -2.0
575,444 - H281DRAFT_02405 0.47 -1.3
575,515 + H281DRAFT_02405 0.53 -2.4
575,515 + H281DRAFT_02405 0.53 -0.3
575,516 - H281DRAFT_02405 0.53 -1.1
575,587 + H281DRAFT_02405 0.59 -1.8
575,591 - H281DRAFT_02405 0.60 -1.7

Or see this region's nucleotide sequence