Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02373

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02372 and H281DRAFT_02373 are separated by 154 nucleotidesH281DRAFT_02373 and H281DRAFT_02374 are separated by 101 nucleotides H281DRAFT_02372: H281DRAFT_02372 - transcriptional regulator, LysR family, at 532,799 to 533,698 _02372 H281DRAFT_02373: H281DRAFT_02373 - methylmalonate-semialdehyde dehydrogenase [acylating], at 533,853 to 535,391 _02373 H281DRAFT_02374: H281DRAFT_02374 - choline dehydrogenase, at 535,493 to 537,205 _02374 Position (kb) 533 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 532.859 kb on - strandat 533.262 kb on + strand, within H281DRAFT_02372at 533.263 kb on - strand, within H281DRAFT_02372at 533.706 kb on + strandat 533.706 kb on + strandat 533.707 kb on - strandat 533.710 kb on - strandat 533.710 kb on - strandat 533.719 kb on + strandat 533.720 kb on - strandat 533.738 kb on - strandat 533.738 kb on - strandat 533.738 kb on - strandat 533.866 kb on - strandat 533.866 kb on - strandat 534.322 kb on + strand, within H281DRAFT_02373at 534.323 kb on - strand, within H281DRAFT_02373at 534.336 kb on - strand, within H281DRAFT_02373at 534.388 kb on + strand, within H281DRAFT_02373at 534.389 kb on - strand, within H281DRAFT_02373at 534.460 kb on + strand, within H281DRAFT_02373at 534.460 kb on + strand, within H281DRAFT_02373at 534.512 kb on + strand, within H281DRAFT_02373at 534.773 kb on + strand, within H281DRAFT_02373at 534.774 kb on - strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.013 kb on - strand, within H281DRAFT_02373at 535.023 kb on - strand, within H281DRAFT_02373at 535.023 kb on - strand, within H281DRAFT_02373at 535.033 kb on - strand, within H281DRAFT_02373at 535.060 kb on + strand, within H281DRAFT_02373at 535.061 kb on - strand, within H281DRAFT_02373at 535.308 kb on + strandat 535.308 kb on + strandat 535.319 kb on + strandat 535.319 kb on + strandat 535.320 kb on - strandat 535.349 kb on + strandat 535.390 kb on - strandat 535.390 kb on - strandat 535.390 kb on - strandat 535.457 kb on + strandat 535.462 kb on - strandat 535.653 kb on - strandat 535.718 kb on + strand, within H281DRAFT_02374at 535.720 kb on + strand, within H281DRAFT_02374at 535.721 kb on - strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.816 kb on + strand, within H281DRAFT_02374at 535.816 kb on + strand, within H281DRAFT_02374at 535.817 kb on - strand, within H281DRAFT_02374at 535.838 kb on + strand, within H281DRAFT_02374at 536.252 kb on + strand, within H281DRAFT_02374at 536.336 kb on - strand, within H281DRAFT_02374at 536.370 kb on + strand, within H281DRAFT_02374

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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532,859 - -1.0
533,262 + H281DRAFT_02372 0.51 +1.5
533,263 - H281DRAFT_02372 0.52 +0.7
533,706 + -0.4
533,706 + -3.0
533,707 - -0.4
533,710 - +1.7
533,710 - +0.1
533,719 + +0.1
533,720 - +0.5
533,738 - +0.3
533,738 - +0.5
533,738 - -1.2
533,866 - +0.0
533,866 - -3.7
534,322 + H281DRAFT_02373 0.30 -2.7
534,323 - H281DRAFT_02373 0.31 +2.5
534,336 - H281DRAFT_02373 0.31 -0.4
534,388 + H281DRAFT_02373 0.35 -0.1
534,389 - H281DRAFT_02373 0.35 -0.9
534,460 + H281DRAFT_02373 0.39 -0.3
534,460 + H281DRAFT_02373 0.39 -1.0
534,512 + H281DRAFT_02373 0.43 +0.4
534,773 + H281DRAFT_02373 0.60 -0.7
534,774 - H281DRAFT_02373 0.60 +0.0
535,012 + H281DRAFT_02373 0.75 -1.3
535,012 + H281DRAFT_02373 0.75 +0.4
535,012 + H281DRAFT_02373 0.75 +0.1
535,013 - H281DRAFT_02373 0.75 -0.7
535,023 - H281DRAFT_02373 0.76 +2.8
535,023 - H281DRAFT_02373 0.76 +1.4
535,033 - H281DRAFT_02373 0.77 -0.4
535,060 + H281DRAFT_02373 0.78 +0.1
535,061 - H281DRAFT_02373 0.78 +1.1
535,308 + +0.0
535,308 + -0.5
535,319 + -0.6
535,319 + +1.9
535,320 - -0.3
535,349 + -1.4
535,390 - +0.5
535,390 - -2.1
535,390 - +0.6
535,457 + +0.8
535,462 - +0.2
535,653 - +0.2
535,718 + H281DRAFT_02374 0.13 +0.3
535,720 + H281DRAFT_02374 0.13 +0.2
535,721 - H281DRAFT_02374 0.13 +0.8
535,814 + H281DRAFT_02374 0.19 +1.1
535,814 + H281DRAFT_02374 0.19 +0.5
535,814 + H281DRAFT_02374 0.19 -2.0
535,815 - H281DRAFT_02374 0.19 -0.2
535,815 - H281DRAFT_02374 0.19 +0.6
535,815 - H281DRAFT_02374 0.19 +0.2
535,816 + H281DRAFT_02374 0.19 +0.3
535,816 + H281DRAFT_02374 0.19 -2.8
535,817 - H281DRAFT_02374 0.19 +0.3
535,838 + H281DRAFT_02374 0.20 +0.9
536,252 + H281DRAFT_02374 0.44 +0.3
536,336 - H281DRAFT_02374 0.49 -1.9
536,370 + H281DRAFT_02374 0.51 +0.8

Or see this region's nucleotide sequence