Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02227

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02226 and H281DRAFT_02227 are separated by 10 nucleotidesH281DRAFT_02227 and H281DRAFT_02228 are separated by 142 nucleotidesH281DRAFT_02228 and H281DRAFT_02229 overlap by 4 nucleotides H281DRAFT_02226: H281DRAFT_02226 - penicillin-binding protein 2, at 370,064 to 372,481 _02226 H281DRAFT_02227: H281DRAFT_02227 - cell elongation-specific peptidoglycan biosynthesis regulator RodA, at 372,492 to 373,640 _02227 H281DRAFT_02228: H281DRAFT_02228 - Sel1 repeat-containing protein, at 373,783 to 374,484 _02228 H281DRAFT_02229: H281DRAFT_02229 - 2-dehydro-3-deoxyglucarate aldolase, at 374,481 to 375,263 _02229 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 373.679 kb on - strandat 373.836 kb on - strandat 373.836 kb on - strandat 373.883 kb on + strand, within H281DRAFT_02228at 373.934 kb on + strand, within H281DRAFT_02228at 373.935 kb on - strand, within H281DRAFT_02228at 373.953 kb on - strand, within H281DRAFT_02228at 373.953 kb on - strand, within H281DRAFT_02228at 373.953 kb on - strand, within H281DRAFT_02228at 373.965 kb on + strand, within H281DRAFT_02228at 373.966 kb on - strand, within H281DRAFT_02228at 374.149 kb on + strand, within H281DRAFT_02228at 374.150 kb on + strand, within H281DRAFT_02228at 374.150 kb on + strand, within H281DRAFT_02228at 374.150 kb on + strand, within H281DRAFT_02228at 374.150 kb on + strand, within H281DRAFT_02228at 374.151 kb on - strand, within H281DRAFT_02228at 374.151 kb on - strand, within H281DRAFT_02228at 374.151 kb on - strand, within H281DRAFT_02228at 374.151 kb on - strand, within H281DRAFT_02228at 374.162 kb on + strand, within H281DRAFT_02228at 374.163 kb on - strand, within H281DRAFT_02228at 374.168 kb on + strand, within H281DRAFT_02228at 374.168 kb on + strand, within H281DRAFT_02228at 374.168 kb on + strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.169 kb on - strand, within H281DRAFT_02228at 374.270 kb on + strand, within H281DRAFT_02228at 374.270 kb on + strand, within H281DRAFT_02228at 374.271 kb on - strand, within H281DRAFT_02228at 374.351 kb on + strand, within H281DRAFT_02228at 374.351 kb on + strand, within H281DRAFT_02228at 374.352 kb on - strand, within H281DRAFT_02228at 374.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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373,679 - +3.8
373,836 - +0.3
373,836 - -0.8
373,883 + H281DRAFT_02228 0.14 -0.3
373,934 + H281DRAFT_02228 0.22 -0.2
373,935 - H281DRAFT_02228 0.22 +1.4
373,953 - H281DRAFT_02228 0.24 +0.2
373,953 - H281DRAFT_02228 0.24 -0.9
373,953 - H281DRAFT_02228 0.24 +1.1
373,965 + H281DRAFT_02228 0.26 +3.0
373,966 - H281DRAFT_02228 0.26 -1.2
374,149 + H281DRAFT_02228 0.52 -0.8
374,150 + H281DRAFT_02228 0.52 -0.2
374,150 + H281DRAFT_02228 0.52 +0.6
374,150 + H281DRAFT_02228 0.52 -0.7
374,150 + H281DRAFT_02228 0.52 +0.6
374,151 - H281DRAFT_02228 0.52 -1.0
374,151 - H281DRAFT_02228 0.52 +0.3
374,151 - H281DRAFT_02228 0.52 +0.1
374,151 - H281DRAFT_02228 0.52 +0.4
374,162 + H281DRAFT_02228 0.54 +0.2
374,163 - H281DRAFT_02228 0.54 -1.6
374,168 + H281DRAFT_02228 0.55 -0.0
374,168 + H281DRAFT_02228 0.55 -0.6
374,168 + H281DRAFT_02228 0.55 -1.4
374,169 - H281DRAFT_02228 0.55 +0.5
374,169 - H281DRAFT_02228 0.55 -0.1
374,169 - H281DRAFT_02228 0.55 +1.3
374,169 - H281DRAFT_02228 0.55 -0.1
374,169 - H281DRAFT_02228 0.55 -0.4
374,169 - H281DRAFT_02228 0.55 -0.5
374,270 + H281DRAFT_02228 0.69 +0.1
374,270 + H281DRAFT_02228 0.69 -0.8
374,271 - H281DRAFT_02228 0.70 -0.7
374,351 + H281DRAFT_02228 0.81 +2.3
374,351 + H281DRAFT_02228 0.81 -2.7
374,352 - H281DRAFT_02228 0.81 -0.3
374,553 - -0.5

Or see this region's nucleotide sequence