Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02152

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02150 and H281DRAFT_02151 are separated by 238 nucleotidesH281DRAFT_02151 and H281DRAFT_02152 are separated by 25 nucleotidesH281DRAFT_02152 and H281DRAFT_02153 are separated by 135 nucleotides H281DRAFT_02150: H281DRAFT_02150 - phosphoheptose isomerase, at 290,500 to 291,087 _02150 H281DRAFT_02151: H281DRAFT_02151 - putative endonuclease, at 291,326 to 291,808 _02151 H281DRAFT_02152: H281DRAFT_02152 - 16S rRNA (cytidine1402-2'-O)-methyltransferase, at 291,834 to 292,712 _02152 H281DRAFT_02153: H281DRAFT_02153 - rare lipoprotein A, at 292,848 to 293,483 _02153 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 290.838 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.848 kb on - strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 291.052 kb on - strandat 291.096 kb on + strandat 291.097 kb on - strandat 291.097 kb on - strandat 291.104 kb on - strandat 291.112 kb on + strandat 291.145 kb on + strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.172 kb on - strandat 291.172 kb on - strandat 291.300 kb on + strandat 291.444 kb on + strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151at 291.511 kb on - strand, within H281DRAFT_02151at 291.546 kb on - strand, within H281DRAFT_02151at 291.546 kb on - strand, within H281DRAFT_02151at 291.870 kb on + strandat 291.870 kb on + strandat 291.870 kb on + strandat 291.888 kb on + strandat 291.888 kb on + strandat 291.888 kb on + strandat 291.889 kb on - strandat 291.889 kb on - strandat 291.889 kb on - strandat 291.889 kb on - strandat 292.012 kb on - strand, within H281DRAFT_02152at 292.049 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.350 kb on + strand, within H281DRAFT_02152at 292.351 kb on - strand, within H281DRAFT_02152at 292.373 kb on - strand, within H281DRAFT_02152at 292.373 kb on - strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.541 kb on - strand, within H281DRAFT_02152at 292.675 kb on - strandat 292.731 kb on - strandat 292.806 kb on + strandat 292.806 kb on + strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.846 kb on + strandat 292.846 kb on + strandat 292.847 kb on - strandat 292.847 kb on - strandat 292.849 kb on + strandat 292.849 kb on + strandat 292.849 kb on + strandat 292.849 kb on + strandat 292.850 kb on - strandat 293.015 kb on - strand, within H281DRAFT_02153at 293.080 kb on + strand, within H281DRAFT_02153at 293.080 kb on + strand, within H281DRAFT_02153at 293.080 kb on + strand, within H281DRAFT_02153at 293.081 kb on - strand, within H281DRAFT_02153at 293.081 kb on - strand, within H281DRAFT_02153at 293.081 kb on - strand, within H281DRAFT_02153at 293.131 kb on + strand, within H281DRAFT_02153at 293.131 kb on + strand, within H281DRAFT_02153at 293.131 kb on + strand, within H281DRAFT_02153at 293.132 kb on - strand, within H281DRAFT_02153at 293.299 kb on + strand, within H281DRAFT_02153at 293.453 kb on + strandat 293.490 kb on + strandat 293.490 kb on + strandat 293.490 kb on - strandat 293.491 kb on - strandat 293.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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290,838 + H281DRAFT_02150 0.57 +0.6
290,847 + H281DRAFT_02150 0.59 +0.3
290,847 + H281DRAFT_02150 0.59 -0.1
290,847 + H281DRAFT_02150 0.59 +0.1
290,847 + H281DRAFT_02150 0.59 +0.3
290,847 + H281DRAFT_02150 0.59 +5.5
290,848 - H281DRAFT_02150 0.59 +0.6
290,955 + H281DRAFT_02150 0.77 -0.2
290,955 + H281DRAFT_02150 0.77 +1.2
291,052 - -1.4
291,096 + +0.7
291,097 - +0.8
291,097 - -0.4
291,104 - -0.4
291,112 + +0.7
291,145 + -1.2
291,146 - +0.3
291,146 - -1.1
291,146 - -0.4
291,146 - +1.4
291,146 - +1.5
291,172 - +0.5
291,172 - -0.0
291,300 + -0.4
291,444 + H281DRAFT_02151 0.24 +0.7
291,445 - H281DRAFT_02151 0.25 +1.8
291,445 - H281DRAFT_02151 0.25 -0.0
291,445 - H281DRAFT_02151 0.25 -1.8
291,462 - H281DRAFT_02151 0.28 +1.0
291,462 - H281DRAFT_02151 0.28 -0.4
291,511 - H281DRAFT_02151 0.38 -0.2
291,546 - H281DRAFT_02151 0.46 +0.5
291,546 - H281DRAFT_02151 0.46 +0.5
291,870 + +0.6
291,870 + +1.2
291,870 + +1.9
291,888 + +1.2
291,888 + +1.7
291,888 + -0.4
291,889 - +1.0
291,889 - +1.5
291,889 - +1.8
291,889 - +0.3
292,012 - H281DRAFT_02152 0.20 +2.5
292,049 + H281DRAFT_02152 0.24 +2.0
292,110 + H281DRAFT_02152 0.31 +1.6
292,110 + H281DRAFT_02152 0.31 +1.0
292,110 + H281DRAFT_02152 0.31 +1.4
292,110 + H281DRAFT_02152 0.31 +1.2
292,111 - H281DRAFT_02152 0.32 +1.3
292,111 - H281DRAFT_02152 0.32 +1.0
292,111 - H281DRAFT_02152 0.32 +0.9
292,111 - H281DRAFT_02152 0.32 +0.8
292,350 + H281DRAFT_02152 0.59 -0.2
292,351 - H281DRAFT_02152 0.59 +2.6
292,373 - H281DRAFT_02152 0.61 +1.0
292,373 - H281DRAFT_02152 0.61 -0.4
292,531 + H281DRAFT_02152 0.79 +0.3
292,531 + H281DRAFT_02152 0.79 +2.2
292,531 + H281DRAFT_02152 0.79 +2.3
292,540 + H281DRAFT_02152 0.80 +2.8
292,540 + H281DRAFT_02152 0.80 +2.1
292,540 + H281DRAFT_02152 0.80 +1.1
292,540 + H281DRAFT_02152 0.80 +1.9
292,541 - H281DRAFT_02152 0.80 +3.3
292,675 - +1.2
292,731 - +0.4
292,806 + +1.6
292,806 + +0.0
292,807 - -2.1
292,807 - -0.3
292,807 - +0.6
292,807 - +0.2
292,807 - +0.4
292,846 + -0.4
292,846 + +0.8
292,847 - -0.2
292,847 - -0.8
292,849 + -2.1
292,849 + +0.6
292,849 + +0.2
292,849 + -0.5
292,850 - -0.0
293,015 - H281DRAFT_02153 0.26 -0.4
293,080 + H281DRAFT_02153 0.36 +1.4
293,080 + H281DRAFT_02153 0.36 -0.4
293,080 + H281DRAFT_02153 0.36 +2.4
293,081 - H281DRAFT_02153 0.37 +0.3
293,081 - H281DRAFT_02153 0.37 +0.6
293,081 - H281DRAFT_02153 0.37 +0.3
293,131 + H281DRAFT_02153 0.44 +1.9
293,131 + H281DRAFT_02153 0.44 +1.1
293,131 + H281DRAFT_02153 0.44 +1.1
293,132 - H281DRAFT_02153 0.45 -0.3
293,299 + H281DRAFT_02153 0.71 -1.0
293,453 + +0.4
293,490 + -0.6
293,490 + +0.7
293,490 - +1.0
293,491 - +0.5
293,491 - -0.5

Or see this region's nucleotide sequence